Cargando…
The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub
Scurrula chingii (W.C. Cheng) H.S. Kiu is a stem hemiparasite of the genus Scurrula in the family Loranthaceae distributed in southwest China and northern Vietnam. Here, we report and characterize the complete plastid genome sequence of S. chingii to provide genomic resources useful for the phylogen...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850402/ https://www.ncbi.nlm.nih.gov/pubmed/33553646 http://dx.doi.org/10.1080/23802359.2020.1863166 |
_version_ | 1783645434854506496 |
---|---|
author | Li, Manru Zhang, Yifei Li, Yuanjie Zhang, Ling |
author_facet | Li, Manru Zhang, Yifei Li, Yuanjie Zhang, Ling |
author_sort | Li, Manru |
collection | PubMed |
description | Scurrula chingii (W.C. Cheng) H.S. Kiu is a stem hemiparasite of the genus Scurrula in the family Loranthaceae distributed in southwest China and northern Vietnam. Here, we report and characterize the complete plastid genome sequence of S. chingii to provide genomic resources useful for the phylogenetic studies of Santalales. The plastome of S. chingii is 122,764 bp in length, consisted of a large single-copy region (70,726 bp), a small single-copy region (6,091 bp), and a pair of inverted repeat regions (22,974 bp). The GC content of the whole plastome is 37.2%. It contains 109 genes, including 69 CDS (protein-coding genes), eight rRNAs, and 32 tRNAs. The alignment of 14 species complete chloroplast genomes of Loranthaceae was implemented and a phylogenetic tree was constructed using maximum-likelihood (ML) method, which revealed that S. chingii clustered with Scurrula parasitica and Taxillus thibetensis as a monophyletic group. |
format | Online Article Text |
id | pubmed-7850402 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78504022021-02-05 The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub Li, Manru Zhang, Yifei Li, Yuanjie Zhang, Ling Mitochondrial DNA B Resour Mitogenome Announcement Scurrula chingii (W.C. Cheng) H.S. Kiu is a stem hemiparasite of the genus Scurrula in the family Loranthaceae distributed in southwest China and northern Vietnam. Here, we report and characterize the complete plastid genome sequence of S. chingii to provide genomic resources useful for the phylogenetic studies of Santalales. The plastome of S. chingii is 122,764 bp in length, consisted of a large single-copy region (70,726 bp), a small single-copy region (6,091 bp), and a pair of inverted repeat regions (22,974 bp). The GC content of the whole plastome is 37.2%. It contains 109 genes, including 69 CDS (protein-coding genes), eight rRNAs, and 32 tRNAs. The alignment of 14 species complete chloroplast genomes of Loranthaceae was implemented and a phylogenetic tree was constructed using maximum-likelihood (ML) method, which revealed that S. chingii clustered with Scurrula parasitica and Taxillus thibetensis as a monophyletic group. Taylor & Francis 2021-01-27 /pmc/articles/PMC7850402/ /pubmed/33553646 http://dx.doi.org/10.1080/23802359.2020.1863166 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Manru Zhang, Yifei Li, Yuanjie Zhang, Ling The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title | The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title_full | The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title_fullStr | The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title_full_unstemmed | The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title_short | The complete chloroplast genome of Scurrula chingii (W.C. Cheng) H.S. Kiu (Loranthaceae), a hemiparasitic shrub |
title_sort | complete chloroplast genome of scurrula chingii (w.c. cheng) h.s. kiu (loranthaceae), a hemiparasitic shrub |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850402/ https://www.ncbi.nlm.nih.gov/pubmed/33553646 http://dx.doi.org/10.1080/23802359.2020.1863166 |
work_keys_str_mv | AT limanru thecompletechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT zhangyifei thecompletechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT liyuanjie thecompletechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT zhangling thecompletechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT limanru completechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT zhangyifei completechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT liyuanjie completechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub AT zhangling completechloroplastgenomeofscurrulachingiiwcchenghskiuloranthaceaeahemiparasiticshrub |