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The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China
Scutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850432/ https://www.ncbi.nlm.nih.gov/pubmed/33553625 http://dx.doi.org/10.1080/23802359.2020.1781562 |
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author | Liu, Xiangning Zuo, Youwei Lin, Le Li, Wenqiao Wang, Qian Deng, Hongping |
author_facet | Liu, Xiangning Zuo, Youwei Lin, Le Li, Wenqiao Wang, Qian Deng, Hongping |
author_sort | Liu, Xiangning |
collection | PubMed |
description | Scutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a pair of inverted repeats (IRs) of 25,223 bp separated by a large single-copy (LSC) region and a small single-copy (SSC) region of 84,096 bp and 17,524 bp, respectively. The whole cp genome contains 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The overall GC content of the circular genome is 38.4%, whereas the corresponding values in LSC, SSC, and IR regions are 36.4, 32.6, and 43.6%, respectively. The phylogenetic analysis based on the complete cp genomes of the Lamiaceae family indicated that S. tsinyunensis was closely related to S. insignis. |
format | Online Article Text |
id | pubmed-7850432 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78504322021-02-05 The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China Liu, Xiangning Zuo, Youwei Lin, Le Li, Wenqiao Wang, Qian Deng, Hongping Mitochondrial DNA B Resour Mitogenome Announcement Scutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a pair of inverted repeats (IRs) of 25,223 bp separated by a large single-copy (LSC) region and a small single-copy (SSC) region of 84,096 bp and 17,524 bp, respectively. The whole cp genome contains 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The overall GC content of the circular genome is 38.4%, whereas the corresponding values in LSC, SSC, and IR regions are 36.4, 32.6, and 43.6%, respectively. The phylogenetic analysis based on the complete cp genomes of the Lamiaceae family indicated that S. tsinyunensis was closely related to S. insignis. Taylor & Francis 2020-06-24 /pmc/articles/PMC7850432/ /pubmed/33553625 http://dx.doi.org/10.1080/23802359.2020.1781562 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Xiangning Zuo, Youwei Lin, Le Li, Wenqiao Wang, Qian Deng, Hongping The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title_full | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title_fullStr | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title_full_unstemmed | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title_short | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
title_sort | complete chloroplast genome of scutellaria tsinyunensis (lamiaceae), an endemic species from china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850432/ https://www.ncbi.nlm.nih.gov/pubmed/33553625 http://dx.doi.org/10.1080/23802359.2020.1781562 |
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