The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis

Sargassum hemiphyllum (Turner) C. Agardh is an important brown macroalga. In this study, we presented the complete chloroplast genome of its variety S. hemiphyllum var. chinense using genome skimming approach. Circular mapping revealed its sequence length was 124,319 bp, with a large single-copy reg...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Xiaowen, Zhang, Peng, Zhang, Yonghua, Wang, Tiegan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850454/
https://www.ncbi.nlm.nih.gov/pubmed/33553644
http://dx.doi.org/10.1080/23802359.2020.1863165
_version_ 1783645447056785408
author Wu, Xiaowen
Zhang, Peng
Zhang, Yonghua
Wang, Tiegan
author_facet Wu, Xiaowen
Zhang, Peng
Zhang, Yonghua
Wang, Tiegan
author_sort Wu, Xiaowen
collection PubMed
description Sargassum hemiphyllum (Turner) C. Agardh is an important brown macroalga. In this study, we presented the complete chloroplast genome of its variety S. hemiphyllum var. chinense using genome skimming approach. Circular mapping revealed its sequence length was 124,319 bp, with a large single-copy region (LSC, 73,505 bp) and a small single copy region (SSC, 39,922 bp) separated by a pair of inverted repeats (IRs, 5446 bp). Its chloroplast genome contained 173 genes, including 139 protein-coding, 6 rRNA, and 28 tRNA genes. The phylogenetic analysis indicated that S. hemiphyllum var. chinense was closely related with S. confusum.
format Online
Article
Text
id pubmed-7850454
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78504542021-02-05 The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis Wu, Xiaowen Zhang, Peng Zhang, Yonghua Wang, Tiegan Mitochondrial DNA B Resour Mitogenome Announcement Sargassum hemiphyllum (Turner) C. Agardh is an important brown macroalga. In this study, we presented the complete chloroplast genome of its variety S. hemiphyllum var. chinense using genome skimming approach. Circular mapping revealed its sequence length was 124,319 bp, with a large single-copy region (LSC, 73,505 bp) and a small single copy region (SSC, 39,922 bp) separated by a pair of inverted repeats (IRs, 5446 bp). Its chloroplast genome contained 173 genes, including 139 protein-coding, 6 rRNA, and 28 tRNA genes. The phylogenetic analysis indicated that S. hemiphyllum var. chinense was closely related with S. confusum. Taylor & Francis 2021-01-27 /pmc/articles/PMC7850454/ /pubmed/33553644 http://dx.doi.org/10.1080/23802359.2020.1863165 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Xiaowen
Zhang, Peng
Zhang, Yonghua
Wang, Tiegan
The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title_full The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title_short The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis
title_sort complete chloroplast genome of sargassum hemiphyllum var. chinense (sargassaceae, phaeophyceae) and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850454/
https://www.ncbi.nlm.nih.gov/pubmed/33553644
http://dx.doi.org/10.1080/23802359.2020.1863165
work_keys_str_mv AT wuxiaowen thecompletechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT zhangpeng thecompletechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT zhangyonghua thecompletechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT wangtiegan thecompletechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT wuxiaowen completechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT zhangpeng completechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT zhangyonghua completechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis
AT wangtiegan completechloroplastgenomeofsargassumhemiphyllumvarchinensesargassaceaephaeophyceaeanditsphylogeneticanalysis

Ejemplares similares