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Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil

The new coronavirus, which began to be called SARS-CoV-2, is a single-stranded RNA beta coronavirus, initially identified in Wuhan (Hubei province, China) and currently spreading across six continents causing a considerable harm to patients, with no specific tools until now to provide prognostic out...

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Autores principales: Paiva Proença Lobo Lopes, Flávia, Kitamura, Felipe Campos, Prado, Gustavo Faibischew, Kuriki, Paulo Eduardo de Aguiar, Garcia, Marcio Ricardo Taveira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850490/
https://www.ncbi.nlm.nih.gov/pubmed/33524039
http://dx.doi.org/10.1371/journal.pone.0245384
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author Paiva Proença Lobo Lopes, Flávia
Kitamura, Felipe Campos
Prado, Gustavo Faibischew
Kuriki, Paulo Eduardo de Aguiar
Garcia, Marcio Ricardo Taveira
author_facet Paiva Proença Lobo Lopes, Flávia
Kitamura, Felipe Campos
Prado, Gustavo Faibischew
Kuriki, Paulo Eduardo de Aguiar
Garcia, Marcio Ricardo Taveira
author_sort Paiva Proença Lobo Lopes, Flávia
collection PubMed
description The new coronavirus, which began to be called SARS-CoV-2, is a single-stranded RNA beta coronavirus, initially identified in Wuhan (Hubei province, China) and currently spreading across six continents causing a considerable harm to patients, with no specific tools until now to provide prognostic outcomes. Thus, the aim of this study is to evaluate possible findings on chest CT of patients with signs and symptoms of respiratory syndromes and positive epidemiological factors for COVID-19 infection and to correlate them with the course of the disease. In this sense, it is also expected to develop specific machine learning algorithm for this purpose, through pulmonary segmentation, which can predict possible prognostic factors, through more accurate results. Our alternative hypothesis is that the machine learning model based on clinical, radiological and epidemiological data will be able to predict the severity prognosis of patients infected with COVID-19. We will perform a multicenter retrospective longitudinal study to obtain a large number of cases in a short period of time, for better study validation. Our convenience sample (at least 20 cases for each outcome) will be collected in each center considering the inclusion and exclusion criteria. We will evaluate patients who enter the hospital with clinical signs and symptoms of acute respiratory syndrome, from March to May 2020. We will include individuals with signs and symptoms of acute respiratory syndrome, with positive epidemiological history for COVID-19, who have performed a chest computed tomography. We will assess chest CT of these patients and to correlate them with the course of the disease. Primary outcomes:1) Time to hospital discharge; 2) Length of stay in the ICU; 3) orotracheal intubation;4) Development of Acute Respiratory Discomfort Syndrome. Secondary outcomes:1) Sepsis; 2) Hypotension or cardiocirculatory dysfunction requiring the prescription of vasopressors or inotropes; 3) Coagulopathy; 4) Acute Myocardial Infarction; 5) Acute Renal Insufficiency; 6) Death. We will use the AUC and F1-score of these algorithms as the main metrics, and we hope to identify algorithms capable of generalizing their results for each specified primary and secondary outcome.
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spelling pubmed-78504902021-02-09 Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil Paiva Proença Lobo Lopes, Flávia Kitamura, Felipe Campos Prado, Gustavo Faibischew Kuriki, Paulo Eduardo de Aguiar Garcia, Marcio Ricardo Taveira PLoS One Registered Report Protocol The new coronavirus, which began to be called SARS-CoV-2, is a single-stranded RNA beta coronavirus, initially identified in Wuhan (Hubei province, China) and currently spreading across six continents causing a considerable harm to patients, with no specific tools until now to provide prognostic outcomes. Thus, the aim of this study is to evaluate possible findings on chest CT of patients with signs and symptoms of respiratory syndromes and positive epidemiological factors for COVID-19 infection and to correlate them with the course of the disease. In this sense, it is also expected to develop specific machine learning algorithm for this purpose, through pulmonary segmentation, which can predict possible prognostic factors, through more accurate results. Our alternative hypothesis is that the machine learning model based on clinical, radiological and epidemiological data will be able to predict the severity prognosis of patients infected with COVID-19. We will perform a multicenter retrospective longitudinal study to obtain a large number of cases in a short period of time, for better study validation. Our convenience sample (at least 20 cases for each outcome) will be collected in each center considering the inclusion and exclusion criteria. We will evaluate patients who enter the hospital with clinical signs and symptoms of acute respiratory syndrome, from March to May 2020. We will include individuals with signs and symptoms of acute respiratory syndrome, with positive epidemiological history for COVID-19, who have performed a chest computed tomography. We will assess chest CT of these patients and to correlate them with the course of the disease. Primary outcomes:1) Time to hospital discharge; 2) Length of stay in the ICU; 3) orotracheal intubation;4) Development of Acute Respiratory Discomfort Syndrome. Secondary outcomes:1) Sepsis; 2) Hypotension or cardiocirculatory dysfunction requiring the prescription of vasopressors or inotropes; 3) Coagulopathy; 4) Acute Myocardial Infarction; 5) Acute Renal Insufficiency; 6) Death. We will use the AUC and F1-score of these algorithms as the main metrics, and we hope to identify algorithms capable of generalizing their results for each specified primary and secondary outcome. Public Library of Science 2021-02-01 /pmc/articles/PMC7850490/ /pubmed/33524039 http://dx.doi.org/10.1371/journal.pone.0245384 Text en © 2021 Paiva Proença Lobo Lopes et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Registered Report Protocol
Paiva Proença Lobo Lopes, Flávia
Kitamura, Felipe Campos
Prado, Gustavo Faibischew
Kuriki, Paulo Eduardo de Aguiar
Garcia, Marcio Ricardo Taveira
Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title_full Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title_fullStr Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title_full_unstemmed Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title_short Machine learning model for predicting severity prognosis in patients infected with COVID-19: Study protocol from COVID-AI Brasil
title_sort machine learning model for predicting severity prognosis in patients infected with covid-19: study protocol from covid-ai brasil
topic Registered Report Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850490/
https://www.ncbi.nlm.nih.gov/pubmed/33524039
http://dx.doi.org/10.1371/journal.pone.0245384
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