Cargando…

Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy

BACKGROUND: We aimed to train and test a deep learning classifier to support the diagnosis of coronavirus disease 2019 (COVID-19) using chest x-ray (CXR) on a cohort of subjects from two hospitals in Lombardy, Italy. METHODS: We used for training and validation an ensemble of ten convolutional neura...

Descripción completa

Detalles Bibliográficos
Autores principales: Castiglioni, Isabella, Ippolito, Davide, Interlenghi, Matteo, Monti, Caterina Beatrice, Salvatore, Christian, Schiaffino, Simone, Polidori, Annalisa, Gandola, Davide, Messa, Cristina, Sardanelli, Francesco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850902/
https://www.ncbi.nlm.nih.gov/pubmed/33527198
http://dx.doi.org/10.1186/s41747-020-00203-z
_version_ 1783645535322767360
author Castiglioni, Isabella
Ippolito, Davide
Interlenghi, Matteo
Monti, Caterina Beatrice
Salvatore, Christian
Schiaffino, Simone
Polidori, Annalisa
Gandola, Davide
Messa, Cristina
Sardanelli, Francesco
author_facet Castiglioni, Isabella
Ippolito, Davide
Interlenghi, Matteo
Monti, Caterina Beatrice
Salvatore, Christian
Schiaffino, Simone
Polidori, Annalisa
Gandola, Davide
Messa, Cristina
Sardanelli, Francesco
author_sort Castiglioni, Isabella
collection PubMed
description BACKGROUND: We aimed to train and test a deep learning classifier to support the diagnosis of coronavirus disease 2019 (COVID-19) using chest x-ray (CXR) on a cohort of subjects from two hospitals in Lombardy, Italy. METHODS: We used for training and validation an ensemble of ten convolutional neural networks (CNNs) with mainly bedside CXRs of 250 COVID-19 and 250 non-COVID-19 subjects from two hospitals (Centres 1 and 2). We then tested such system on bedside CXRs of an independent group of 110 patients (74 COVID-19, 36 non-COVID-19) from one of the two hospitals. A retrospective reading was performed by two radiologists in the absence of any clinical information, with the aim to differentiate COVID-19 from non-COVID-19 patients. Real-time polymerase chain reaction served as the reference standard. RESULTS: At 10-fold cross-validation, our deep learning model classified COVID-19 and non-COVID-19 patients with 0.78 sensitivity (95% confidence interval [CI] 0.74–0.81), 0.82 specificity (95% CI 0.78–0.85), and 0.89 area under the curve (AUC) (95% CI 0.86–0.91). For the independent dataset, deep learning showed 0.80 sensitivity (95% CI 0.72–0.86) (59/74), 0.81 specificity (29/36) (95% CI 0.73–0.87), and 0.81 AUC (95% CI 0.73–0.87). Radiologists’ reading obtained 0.63 sensitivity (95% CI 0.52–0.74) and 0.78 specificity (95% CI 0.61–0.90) in Centre 1 and 0.64 sensitivity (95% CI 0.52–0.74) and 0.86 specificity (95% CI 0.71–0.95) in Centre 2. CONCLUSIONS: This preliminary experience based on ten CNNs trained on a limited training dataset shows an interesting potential of deep learning for COVID-19 diagnosis. Such tool is in training with new CXRs to further increase its performance.
format Online
Article
Text
id pubmed-7850902
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-78509022021-02-02 Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy Castiglioni, Isabella Ippolito, Davide Interlenghi, Matteo Monti, Caterina Beatrice Salvatore, Christian Schiaffino, Simone Polidori, Annalisa Gandola, Davide Messa, Cristina Sardanelli, Francesco Eur Radiol Exp Original Article BACKGROUND: We aimed to train and test a deep learning classifier to support the diagnosis of coronavirus disease 2019 (COVID-19) using chest x-ray (CXR) on a cohort of subjects from two hospitals in Lombardy, Italy. METHODS: We used for training and validation an ensemble of ten convolutional neural networks (CNNs) with mainly bedside CXRs of 250 COVID-19 and 250 non-COVID-19 subjects from two hospitals (Centres 1 and 2). We then tested such system on bedside CXRs of an independent group of 110 patients (74 COVID-19, 36 non-COVID-19) from one of the two hospitals. A retrospective reading was performed by two radiologists in the absence of any clinical information, with the aim to differentiate COVID-19 from non-COVID-19 patients. Real-time polymerase chain reaction served as the reference standard. RESULTS: At 10-fold cross-validation, our deep learning model classified COVID-19 and non-COVID-19 patients with 0.78 sensitivity (95% confidence interval [CI] 0.74–0.81), 0.82 specificity (95% CI 0.78–0.85), and 0.89 area under the curve (AUC) (95% CI 0.86–0.91). For the independent dataset, deep learning showed 0.80 sensitivity (95% CI 0.72–0.86) (59/74), 0.81 specificity (29/36) (95% CI 0.73–0.87), and 0.81 AUC (95% CI 0.73–0.87). Radiologists’ reading obtained 0.63 sensitivity (95% CI 0.52–0.74) and 0.78 specificity (95% CI 0.61–0.90) in Centre 1 and 0.64 sensitivity (95% CI 0.52–0.74) and 0.86 specificity (95% CI 0.71–0.95) in Centre 2. CONCLUSIONS: This preliminary experience based on ten CNNs trained on a limited training dataset shows an interesting potential of deep learning for COVID-19 diagnosis. Such tool is in training with new CXRs to further increase its performance. Springer International Publishing 2021-02-02 /pmc/articles/PMC7850902/ /pubmed/33527198 http://dx.doi.org/10.1186/s41747-020-00203-z Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Castiglioni, Isabella
Ippolito, Davide
Interlenghi, Matteo
Monti, Caterina Beatrice
Salvatore, Christian
Schiaffino, Simone
Polidori, Annalisa
Gandola, Davide
Messa, Cristina
Sardanelli, Francesco
Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title_full Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title_fullStr Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title_full_unstemmed Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title_short Machine learning applied on chest x-ray can aid in the diagnosis of COVID-19: a first experience from Lombardy, Italy
title_sort machine learning applied on chest x-ray can aid in the diagnosis of covid-19: a first experience from lombardy, italy
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850902/
https://www.ncbi.nlm.nih.gov/pubmed/33527198
http://dx.doi.org/10.1186/s41747-020-00203-z
work_keys_str_mv AT castiglioniisabella machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT ippolitodavide machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT interlenghimatteo machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT monticaterinabeatrice machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT salvatorechristian machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT schiaffinosimone machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT polidoriannalisa machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT gandoladavide machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT messacristina machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly
AT sardanellifrancesco machinelearningappliedonchestxraycanaidinthediagnosisofcovid19afirstexperiencefromlombardyitaly