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Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination
Contrast-enhanced magnetic resonance imaging (MRI) is a promising method for estimating myocardial blood flow (MBF). However, it is often affected by noise from imaging artefacts, such as dark rim artefact obscuring relevant features. Machine learning enables extracting important features from such...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851105/ https://www.ncbi.nlm.nih.gov/pubmed/32820382 http://dx.doi.org/10.1007/s10439-020-02591-0 |
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author | Husso, Minna Afara, Isaac O. Nissi, Mikko J. Kuivanen, Antti Halonen, Paavo Tarkia, Miikka Teuho, Jarmo Saunavaara, Virva Vainio, Pauli Sipola, Petri Manninen, Hannu Ylä-Herttuala, Seppo Knuuti, Juhani Töyräs, Juha |
author_facet | Husso, Minna Afara, Isaac O. Nissi, Mikko J. Kuivanen, Antti Halonen, Paavo Tarkia, Miikka Teuho, Jarmo Saunavaara, Virva Vainio, Pauli Sipola, Petri Manninen, Hannu Ylä-Herttuala, Seppo Knuuti, Juhani Töyräs, Juha |
author_sort | Husso, Minna |
collection | PubMed |
description | Contrast-enhanced magnetic resonance imaging (MRI) is a promising method for estimating myocardial blood flow (MBF). However, it is often affected by noise from imaging artefacts, such as dark rim artefact obscuring relevant features. Machine learning enables extracting important features from such noisy data and is increasingly applied in areas where traditional approaches are limited. In this study, we investigate the capacity of machine learning, particularly support vector machines (SVM) and random forests (RF), for estimating MBF from tissue impulse response signal in an animal model. Domestic pigs (n = 5) were subjected to contrast enhanced first pass MRI (MRI-FP) and the impulse response at different regions of the myocardium (n = 24/pig) were evaluated at rest (n = 120) and stress (n = 96). Reference MBF was then measured using positron emission tomography (PET). Since the impulse response may include artefacts, classification models based on SVM and RF were developed to discriminate noisy signal. In addition, regression models based on SVM, RF and linear regression (for comparison) were developed for estimating MBF from the impulse response at rest and stress. The classification and regression models were trained on data from 4 pigs (n = 168) and tested on 1 pig (n = 48). Models based on SVM and RF outperformed linear regression, with higher correlation (R(SVM)(2) = 0.81, R(RF)(2) = 0.74, R(linear_regression)(2) = 0.60; ρ(SVM) = 0.76, ρ(RF) = 0.76, ρ(linear_regression) = 0.71) and lower error (RMSE(SVM) = 0.67 mL/g/min, RMSE(RF) = 0.77 mL/g/min, RMSE(linear_regression) = 0.96 mL/g/min) for predicting MBF from MRI impulse response signal. Classifier based on SVM was optimal for detecting impulse response signals with artefacts (accuracy = 92%). Modified dual bolus MRI signal, combined with machine learning, has potential for accurately estimating MBF at rest and stress states, even from signals with dark rim artefacts. This could provide a protocol for reliable and easy estimation of MBF, although further research is needed to clinically validate the approach. |
format | Online Article Text |
id | pubmed-7851105 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-78511052021-02-08 Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination Husso, Minna Afara, Isaac O. Nissi, Mikko J. Kuivanen, Antti Halonen, Paavo Tarkia, Miikka Teuho, Jarmo Saunavaara, Virva Vainio, Pauli Sipola, Petri Manninen, Hannu Ylä-Herttuala, Seppo Knuuti, Juhani Töyräs, Juha Ann Biomed Eng Original Article Contrast-enhanced magnetic resonance imaging (MRI) is a promising method for estimating myocardial blood flow (MBF). However, it is often affected by noise from imaging artefacts, such as dark rim artefact obscuring relevant features. Machine learning enables extracting important features from such noisy data and is increasingly applied in areas where traditional approaches are limited. In this study, we investigate the capacity of machine learning, particularly support vector machines (SVM) and random forests (RF), for estimating MBF from tissue impulse response signal in an animal model. Domestic pigs (n = 5) were subjected to contrast enhanced first pass MRI (MRI-FP) and the impulse response at different regions of the myocardium (n = 24/pig) were evaluated at rest (n = 120) and stress (n = 96). Reference MBF was then measured using positron emission tomography (PET). Since the impulse response may include artefacts, classification models based on SVM and RF were developed to discriminate noisy signal. In addition, regression models based on SVM, RF and linear regression (for comparison) were developed for estimating MBF from the impulse response at rest and stress. The classification and regression models were trained on data from 4 pigs (n = 168) and tested on 1 pig (n = 48). Models based on SVM and RF outperformed linear regression, with higher correlation (R(SVM)(2) = 0.81, R(RF)(2) = 0.74, R(linear_regression)(2) = 0.60; ρ(SVM) = 0.76, ρ(RF) = 0.76, ρ(linear_regression) = 0.71) and lower error (RMSE(SVM) = 0.67 mL/g/min, RMSE(RF) = 0.77 mL/g/min, RMSE(linear_regression) = 0.96 mL/g/min) for predicting MBF from MRI impulse response signal. Classifier based on SVM was optimal for detecting impulse response signals with artefacts (accuracy = 92%). Modified dual bolus MRI signal, combined with machine learning, has potential for accurately estimating MBF at rest and stress states, even from signals with dark rim artefacts. This could provide a protocol for reliable and easy estimation of MBF, although further research is needed to clinically validate the approach. Springer International Publishing 2020-08-20 2021 /pmc/articles/PMC7851105/ /pubmed/32820382 http://dx.doi.org/10.1007/s10439-020-02591-0 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Husso, Minna Afara, Isaac O. Nissi, Mikko J. Kuivanen, Antti Halonen, Paavo Tarkia, Miikka Teuho, Jarmo Saunavaara, Virva Vainio, Pauli Sipola, Petri Manninen, Hannu Ylä-Herttuala, Seppo Knuuti, Juhani Töyräs, Juha Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title | Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title_full | Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title_fullStr | Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title_full_unstemmed | Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title_short | Quantification of Myocardial Blood Flow by Machine Learning Analysis of Modified Dual Bolus MRI Examination |
title_sort | quantification of myocardial blood flow by machine learning analysis of modified dual bolus mri examination |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851105/ https://www.ncbi.nlm.nih.gov/pubmed/32820382 http://dx.doi.org/10.1007/s10439-020-02591-0 |
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