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Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characterist...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society of Gene & Cell Therapy
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851426/ https://www.ncbi.nlm.nih.gov/pubmed/33575116 http://dx.doi.org/10.1016/j.omtn.2020.12.016 |
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author | Shi, Yi Zhang, Dan-Dan Liu, Ji-Bin Yang, Xiao-Li Xin, Rui Jia, Cheng-You Wang, Hui-Min Lu, Gai-Xia Wang, Pei-Yao Liu, Yu Li, Zi-Jin Deng, Jing Lin, Qin-Lu Ma, Liang Feng, Shan-Shan Chen, Xiao-Qi Zheng, Xiang-Min Zhou, Ya-Fu Hu, Yong-Jun Yin, Hua-Qun Tian, Lin-Lin Gu, Li-Peng Lv, Zhong-Wei Yu, Fei Li, Wen Ma, Yu-Shui Da, Fu |
author_facet | Shi, Yi Zhang, Dan-Dan Liu, Ji-Bin Yang, Xiao-Li Xin, Rui Jia, Cheng-You Wang, Hui-Min Lu, Gai-Xia Wang, Pei-Yao Liu, Yu Li, Zi-Jin Deng, Jing Lin, Qin-Lu Ma, Liang Feng, Shan-Shan Chen, Xiao-Qi Zheng, Xiang-Min Zhou, Ya-Fu Hu, Yong-Jun Yin, Hua-Qun Tian, Lin-Lin Gu, Li-Peng Lv, Zhong-Wei Yu, Fei Li, Wen Ma, Yu-Shui Da, Fu |
author_sort | Shi, Yi |
collection | PubMed |
description | Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC. |
format | Online Article Text |
id | pubmed-7851426 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Society of Gene & Cell Therapy |
record_format | MEDLINE/PubMed |
spelling | pubmed-78514262021-02-10 Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma Shi, Yi Zhang, Dan-Dan Liu, Ji-Bin Yang, Xiao-Li Xin, Rui Jia, Cheng-You Wang, Hui-Min Lu, Gai-Xia Wang, Pei-Yao Liu, Yu Li, Zi-Jin Deng, Jing Lin, Qin-Lu Ma, Liang Feng, Shan-Shan Chen, Xiao-Qi Zheng, Xiang-Min Zhou, Ya-Fu Hu, Yong-Jun Yin, Hua-Qun Tian, Lin-Lin Gu, Li-Peng Lv, Zhong-Wei Yu, Fei Li, Wen Ma, Yu-Shui Da, Fu Mol Ther Nucleic Acids Original Article Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC. American Society of Gene & Cell Therapy 2021-01-01 /pmc/articles/PMC7851426/ /pubmed/33575116 http://dx.doi.org/10.1016/j.omtn.2020.12.016 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Article Shi, Yi Zhang, Dan-Dan Liu, Ji-Bin Yang, Xiao-Li Xin, Rui Jia, Cheng-You Wang, Hui-Min Lu, Gai-Xia Wang, Pei-Yao Liu, Yu Li, Zi-Jin Deng, Jing Lin, Qin-Lu Ma, Liang Feng, Shan-Shan Chen, Xiao-Qi Zheng, Xiang-Min Zhou, Ya-Fu Hu, Yong-Jun Yin, Hua-Qun Tian, Lin-Lin Gu, Li-Peng Lv, Zhong-Wei Yu, Fei Li, Wen Ma, Yu-Shui Da, Fu Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title | Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title_full | Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title_fullStr | Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title_full_unstemmed | Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title_short | Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma |
title_sort | comprehensive analysis to identify dleu2l/taok1 axis as a prognostic biomarker in hepatocellular carcinoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851426/ https://www.ncbi.nlm.nih.gov/pubmed/33575116 http://dx.doi.org/10.1016/j.omtn.2020.12.016 |
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