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Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characterist...

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Autores principales: Shi, Yi, Zhang, Dan-Dan, Liu, Ji-Bin, Yang, Xiao-Li, Xin, Rui, Jia, Cheng-You, Wang, Hui-Min, Lu, Gai-Xia, Wang, Pei-Yao, Liu, Yu, Li, Zi-Jin, Deng, Jing, Lin, Qin-Lu, Ma, Liang, Feng, Shan-Shan, Chen, Xiao-Qi, Zheng, Xiang-Min, Zhou, Ya-Fu, Hu, Yong-Jun, Yin, Hua-Qun, Tian, Lin-Lin, Gu, Li-Peng, Lv, Zhong-Wei, Yu, Fei, Li, Wen, Ma, Yu-Shui, Da, Fu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851426/
https://www.ncbi.nlm.nih.gov/pubmed/33575116
http://dx.doi.org/10.1016/j.omtn.2020.12.016
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author Shi, Yi
Zhang, Dan-Dan
Liu, Ji-Bin
Yang, Xiao-Li
Xin, Rui
Jia, Cheng-You
Wang, Hui-Min
Lu, Gai-Xia
Wang, Pei-Yao
Liu, Yu
Li, Zi-Jin
Deng, Jing
Lin, Qin-Lu
Ma, Liang
Feng, Shan-Shan
Chen, Xiao-Qi
Zheng, Xiang-Min
Zhou, Ya-Fu
Hu, Yong-Jun
Yin, Hua-Qun
Tian, Lin-Lin
Gu, Li-Peng
Lv, Zhong-Wei
Yu, Fei
Li, Wen
Ma, Yu-Shui
Da, Fu
author_facet Shi, Yi
Zhang, Dan-Dan
Liu, Ji-Bin
Yang, Xiao-Li
Xin, Rui
Jia, Cheng-You
Wang, Hui-Min
Lu, Gai-Xia
Wang, Pei-Yao
Liu, Yu
Li, Zi-Jin
Deng, Jing
Lin, Qin-Lu
Ma, Liang
Feng, Shan-Shan
Chen, Xiao-Qi
Zheng, Xiang-Min
Zhou, Ya-Fu
Hu, Yong-Jun
Yin, Hua-Qun
Tian, Lin-Lin
Gu, Li-Peng
Lv, Zhong-Wei
Yu, Fei
Li, Wen
Ma, Yu-Shui
Da, Fu
author_sort Shi, Yi
collection PubMed
description Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC.
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spelling pubmed-78514262021-02-10 Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma Shi, Yi Zhang, Dan-Dan Liu, Ji-Bin Yang, Xiao-Li Xin, Rui Jia, Cheng-You Wang, Hui-Min Lu, Gai-Xia Wang, Pei-Yao Liu, Yu Li, Zi-Jin Deng, Jing Lin, Qin-Lu Ma, Liang Feng, Shan-Shan Chen, Xiao-Qi Zheng, Xiang-Min Zhou, Ya-Fu Hu, Yong-Jun Yin, Hua-Qun Tian, Lin-Lin Gu, Li-Peng Lv, Zhong-Wei Yu, Fei Li, Wen Ma, Yu-Shui Da, Fu Mol Ther Nucleic Acids Original Article Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC. American Society of Gene & Cell Therapy 2021-01-01 /pmc/articles/PMC7851426/ /pubmed/33575116 http://dx.doi.org/10.1016/j.omtn.2020.12.016 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Shi, Yi
Zhang, Dan-Dan
Liu, Ji-Bin
Yang, Xiao-Li
Xin, Rui
Jia, Cheng-You
Wang, Hui-Min
Lu, Gai-Xia
Wang, Pei-Yao
Liu, Yu
Li, Zi-Jin
Deng, Jing
Lin, Qin-Lu
Ma, Liang
Feng, Shan-Shan
Chen, Xiao-Qi
Zheng, Xiang-Min
Zhou, Ya-Fu
Hu, Yong-Jun
Yin, Hua-Qun
Tian, Lin-Lin
Gu, Li-Peng
Lv, Zhong-Wei
Yu, Fei
Li, Wen
Ma, Yu-Shui
Da, Fu
Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title_full Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title_fullStr Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title_full_unstemmed Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title_short Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
title_sort comprehensive analysis to identify dleu2l/taok1 axis as a prognostic biomarker in hepatocellular carcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7851426/
https://www.ncbi.nlm.nih.gov/pubmed/33575116
http://dx.doi.org/10.1016/j.omtn.2020.12.016
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