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Haploflow: Strain-resolved de novo assembly of viral genomes
In viral infections often multiple related viral strains are present, due to coinfection or within-host evolution. We describe Haploflow, a de Bruijn graph-based assembler for de novo genome assembly of viral strains from mixed sequence samples using a novel flow algorithm. We assessed Haploflow acr...
Autores principales: | Fritz, A., Bremges, A., Deng, Z.-L., Lesker, T.-R., Götting, J., Ganzenmüller, T., Sczyrba, A., Dilthey, A., Klawonn, F., McHardy, A.C. |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7852260/ https://www.ncbi.nlm.nih.gov/pubmed/33532769 http://dx.doi.org/10.1101/2021.01.25.428049 |
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