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Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait

Records on groups of individuals could be valuable for predicting breeding values when a trait is difficult or costly to measure on single individuals, such as feed intake and egg production. Adding genomic information has shown improvement in the accuracy of genetic evaluation of quantitative trait...

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Autores principales: Ma, Xiang, Christensen, Ole F., Gao, Hongding, Huang, Ruihua, Nielsen, Bjarne, Madsen, Per, Jensen, Just, Ostersen, Tage, Li, Pinghua, Shirali, Mahmoud, Su, Guosheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7852592/
https://www.ncbi.nlm.nih.gov/pubmed/32665691
http://dx.doi.org/10.1038/s41437-020-0339-3
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author Ma, Xiang
Christensen, Ole F.
Gao, Hongding
Huang, Ruihua
Nielsen, Bjarne
Madsen, Per
Jensen, Just
Ostersen, Tage
Li, Pinghua
Shirali, Mahmoud
Su, Guosheng
author_facet Ma, Xiang
Christensen, Ole F.
Gao, Hongding
Huang, Ruihua
Nielsen, Bjarne
Madsen, Per
Jensen, Just
Ostersen, Tage
Li, Pinghua
Shirali, Mahmoud
Su, Guosheng
author_sort Ma, Xiang
collection PubMed
description Records on groups of individuals could be valuable for predicting breeding values when a trait is difficult or costly to measure on single individuals, such as feed intake and egg production. Adding genomic information has shown improvement in the accuracy of genetic evaluation of quantitative traits with individual records. Here, we investigated the value of genomic information for traits with group records. Besides, we investigated the improvement in accuracy of genetic evaluation for group-recorded traits when including information on a correlated trait with individual records. The study was based on a simulated pig population, including three scenarios of group structure and size. The results showed that both the genomic information and a correlated trait increased the accuracy of estimated breeding values (EBVs) for traits with group records. The accuracies of EBV obtained from group records with a size 24 were much lower than those with a size 12. Random assignment of animals to pens led to lower accuracy due to the weaker relationship between individuals within each group. It suggests that group records are valuable for genetic evaluation of a trait that is difficult to record on individuals, and the accuracy of genetic evaluation can be considerably increased using genomic information. Moreover, the genetic evaluation for a trait with group records can be greatly improved using a bivariate model, including correlated traits that are recorded individually. For efficient use of group records in genetic evaluation, relatively small group size and close relationships between individuals within one group are recommended.
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spelling pubmed-78525922021-02-08 Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait Ma, Xiang Christensen, Ole F. Gao, Hongding Huang, Ruihua Nielsen, Bjarne Madsen, Per Jensen, Just Ostersen, Tage Li, Pinghua Shirali, Mahmoud Su, Guosheng Heredity (Edinb) Article Records on groups of individuals could be valuable for predicting breeding values when a trait is difficult or costly to measure on single individuals, such as feed intake and egg production. Adding genomic information has shown improvement in the accuracy of genetic evaluation of quantitative traits with individual records. Here, we investigated the value of genomic information for traits with group records. Besides, we investigated the improvement in accuracy of genetic evaluation for group-recorded traits when including information on a correlated trait with individual records. The study was based on a simulated pig population, including three scenarios of group structure and size. The results showed that both the genomic information and a correlated trait increased the accuracy of estimated breeding values (EBVs) for traits with group records. The accuracies of EBV obtained from group records with a size 24 were much lower than those with a size 12. Random assignment of animals to pens led to lower accuracy due to the weaker relationship between individuals within each group. It suggests that group records are valuable for genetic evaluation of a trait that is difficult to record on individuals, and the accuracy of genetic evaluation can be considerably increased using genomic information. Moreover, the genetic evaluation for a trait with group records can be greatly improved using a bivariate model, including correlated traits that are recorded individually. For efficient use of group records in genetic evaluation, relatively small group size and close relationships between individuals within one group are recommended. Springer International Publishing 2020-07-14 2021-01 /pmc/articles/PMC7852592/ /pubmed/32665691 http://dx.doi.org/10.1038/s41437-020-0339-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ma, Xiang
Christensen, Ole F.
Gao, Hongding
Huang, Ruihua
Nielsen, Bjarne
Madsen, Per
Jensen, Just
Ostersen, Tage
Li, Pinghua
Shirali, Mahmoud
Su, Guosheng
Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title_full Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title_fullStr Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title_full_unstemmed Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title_short Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
title_sort prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7852592/
https://www.ncbi.nlm.nih.gov/pubmed/32665691
http://dx.doi.org/10.1038/s41437-020-0339-3
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