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Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study
BACKGROUND: The aetiology of glioma is poorly understood. Summary data from genome-wide association studies (GWAS) can be used in a Mendelian randomisation (MR) phenome-wide association study (PheWAS) to search for glioma risk factors. METHODS: We performed an MR-PheWAS analysing 316 phenotypes, pro...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7852872/ https://www.ncbi.nlm.nih.gov/pubmed/33020596 http://dx.doi.org/10.1038/s41416-020-01083-1 |
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author | Saunders, Charlie N. Cornish, Alex J. Kinnersley, Ben Law, Philip J. Houlston, Richard S. |
author_facet | Saunders, Charlie N. Cornish, Alex J. Kinnersley, Ben Law, Philip J. Houlston, Richard S. |
author_sort | Saunders, Charlie N. |
collection | PubMed |
description | BACKGROUND: The aetiology of glioma is poorly understood. Summary data from genome-wide association studies (GWAS) can be used in a Mendelian randomisation (MR) phenome-wide association study (PheWAS) to search for glioma risk factors. METHODS: We performed an MR-PheWAS analysing 316 phenotypes, proxied by 8387 genetic variants, and summary genetic data from a GWAS of 12,488 glioma cases and 18,169 controls. Causal effects were estimated under a random-effects inverse-variance-weighted (IVW-RE) model, with robust adjusted profile score (MR-RAPS), weighted median and mode-based estimates computed to assess the robustness of findings. Odds ratios per one standard deviation increase in each phenotype were calculated for all glioma, glioblastoma (GBM) and non-GBM tumours. RESULTS: No significant associations (P < 1.58 × 10(−4)) were observed between phenotypes and glioma under the IVW-RE model. Suggestive associations (1.58 × 10(−4) < P < 0.05) were observed between leukocyte telomere length (LTL) with all glioma (OR(SD) = 3.91, P = 9.24 × 10(−3)) and GBM (OR(SD) = 4.86, P = 3.23 × 10(−2)), but the association was primarily driven by the TERT variant rs2736100. Serum low-density lipoprotein cholesterol and plasma HbA1C showed suggestive associations with glioma (OR(SD) = 1.11, P = 1.39 × 10(−2) and OR(SD) = 1.28, P = 1.73 × 10(−2), respectively), both associations being reliant on single genetic variants. CONCLUSIONS: Our study provides further insight into the aetiological basis of glioma for which published data have been mixed. |
format | Online Article Text |
id | pubmed-7852872 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78528722021-02-08 Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study Saunders, Charlie N. Cornish, Alex J. Kinnersley, Ben Law, Philip J. Houlston, Richard S. Br J Cancer Article BACKGROUND: The aetiology of glioma is poorly understood. Summary data from genome-wide association studies (GWAS) can be used in a Mendelian randomisation (MR) phenome-wide association study (PheWAS) to search for glioma risk factors. METHODS: We performed an MR-PheWAS analysing 316 phenotypes, proxied by 8387 genetic variants, and summary genetic data from a GWAS of 12,488 glioma cases and 18,169 controls. Causal effects were estimated under a random-effects inverse-variance-weighted (IVW-RE) model, with robust adjusted profile score (MR-RAPS), weighted median and mode-based estimates computed to assess the robustness of findings. Odds ratios per one standard deviation increase in each phenotype were calculated for all glioma, glioblastoma (GBM) and non-GBM tumours. RESULTS: No significant associations (P < 1.58 × 10(−4)) were observed between phenotypes and glioma under the IVW-RE model. Suggestive associations (1.58 × 10(−4) < P < 0.05) were observed between leukocyte telomere length (LTL) with all glioma (OR(SD) = 3.91, P = 9.24 × 10(−3)) and GBM (OR(SD) = 4.86, P = 3.23 × 10(−2)), but the association was primarily driven by the TERT variant rs2736100. Serum low-density lipoprotein cholesterol and plasma HbA1C showed suggestive associations with glioma (OR(SD) = 1.11, P = 1.39 × 10(−2) and OR(SD) = 1.28, P = 1.73 × 10(−2), respectively), both associations being reliant on single genetic variants. CONCLUSIONS: Our study provides further insight into the aetiological basis of glioma for which published data have been mixed. Nature Publishing Group UK 2020-10-06 2021-01-19 /pmc/articles/PMC7852872/ /pubmed/33020596 http://dx.doi.org/10.1038/s41416-020-01083-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Saunders, Charlie N. Cornish, Alex J. Kinnersley, Ben Law, Philip J. Houlston, Richard S. Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title | Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title_full | Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title_fullStr | Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title_full_unstemmed | Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title_short | Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study |
title_sort | searching for causal relationships of glioma: a phenome-wide mendelian randomisation study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7852872/ https://www.ncbi.nlm.nih.gov/pubmed/33020596 http://dx.doi.org/10.1038/s41416-020-01083-1 |
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