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Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT
Electrical impedance tomography (EIT) is widely used for bedside monitoring of lung ventilation status. Its goal is to reflect the internal conductivity changes and estimate the electrical properties of the tissues in the thorax. However, poor spatial resolution affects EIT image reconstruction to t...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7853495/ https://www.ncbi.nlm.nih.gov/pubmed/33529234 http://dx.doi.org/10.1371/journal.pone.0246071 |
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author | Ko, Yen-Fen Cheng, Kuo-Sheng |
author_facet | Ko, Yen-Fen Cheng, Kuo-Sheng |
author_sort | Ko, Yen-Fen |
collection | PubMed |
description | Electrical impedance tomography (EIT) is widely used for bedside monitoring of lung ventilation status. Its goal is to reflect the internal conductivity changes and estimate the electrical properties of the tissues in the thorax. However, poor spatial resolution affects EIT image reconstruction to the extent that the heart and lung-related impedance images are barely distinguishable. Several studies have attempted to tackle this problem, and approaches based on decomposition of EIT images using linear transformations have been developed, and recently, U-Net has become a prominent architecture for semantic segmentation. In this paper, we propose a novel semi-Siamese U-Net specifically tailored for EIT application. It is based on the state-of-the-art U-Net, whose structure is modified and extended, forming shared encoder with parallel decoders and has multi-task weighted losses added to adapt to the individual separation tasks. The trained semi-Siamese U-Net model was evaluated with a test dataset, and the results were compared with those of the classical U-Net in terms of Dice similarity coefficient and mean absolute error. Results showed that compared with the classical U-Net, semi-Siamese U-Net exhibited performance improvements of 11.37% and 3.2% in Dice similarity coefficient, and 3.16% and 5.54% in mean absolute error, in terms of heart and lung-impedance image separation, respectively. |
format | Online Article Text |
id | pubmed-7853495 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-78534952021-02-09 Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT Ko, Yen-Fen Cheng, Kuo-Sheng PLoS One Research Article Electrical impedance tomography (EIT) is widely used for bedside monitoring of lung ventilation status. Its goal is to reflect the internal conductivity changes and estimate the electrical properties of the tissues in the thorax. However, poor spatial resolution affects EIT image reconstruction to the extent that the heart and lung-related impedance images are barely distinguishable. Several studies have attempted to tackle this problem, and approaches based on decomposition of EIT images using linear transformations have been developed, and recently, U-Net has become a prominent architecture for semantic segmentation. In this paper, we propose a novel semi-Siamese U-Net specifically tailored for EIT application. It is based on the state-of-the-art U-Net, whose structure is modified and extended, forming shared encoder with parallel decoders and has multi-task weighted losses added to adapt to the individual separation tasks. The trained semi-Siamese U-Net model was evaluated with a test dataset, and the results were compared with those of the classical U-Net in terms of Dice similarity coefficient and mean absolute error. Results showed that compared with the classical U-Net, semi-Siamese U-Net exhibited performance improvements of 11.37% and 3.2% in Dice similarity coefficient, and 3.16% and 5.54% in mean absolute error, in terms of heart and lung-impedance image separation, respectively. Public Library of Science 2021-02-02 /pmc/articles/PMC7853495/ /pubmed/33529234 http://dx.doi.org/10.1371/journal.pone.0246071 Text en © 2021 Ko, Cheng http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ko, Yen-Fen Cheng, Kuo-Sheng Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title | Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title_full | Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title_fullStr | Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title_full_unstemmed | Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title_short | Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT |
title_sort | semi-siamese u-net for separation of lung and heart bioimpedance images: a simulation study of thorax eit |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7853495/ https://www.ncbi.nlm.nih.gov/pubmed/33529234 http://dx.doi.org/10.1371/journal.pone.0246071 |
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