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Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs

BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue feature...

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Autores principales: Saba, Luca, Agarwal, Mohit, Patrick, Anubhav, Puvvula, Anudeep, Gupta, Suneet K., Carriero, Alessandro, Laird, John R., Kitas, George D., Johri, Amer M., Balestrieri, Antonella, Falaschi, Zeno, Paschè, Alessio, Viswanathan, Vijay, El-Baz, Ayman, Alam, Iqbal, Jain, Abhinav, Naidu, Subbaram, Oberleitner, Ronald, Khanna, Narendra N., Bit, Arindam, Fatemi, Mostafa, Alizad, Azra, Suri, Jasjit S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7854027/
https://www.ncbi.nlm.nih.gov/pubmed/33532975
http://dx.doi.org/10.1007/s11548-021-02317-0
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author Saba, Luca
Agarwal, Mohit
Patrick, Anubhav
Puvvula, Anudeep
Gupta, Suneet K.
Carriero, Alessandro
Laird, John R.
Kitas, George D.
Johri, Amer M.
Balestrieri, Antonella
Falaschi, Zeno
Paschè, Alessio
Viswanathan, Vijay
El-Baz, Ayman
Alam, Iqbal
Jain, Abhinav
Naidu, Subbaram
Oberleitner, Ronald
Khanna, Narendra N.
Bit, Arindam
Fatemi, Mostafa
Alizad, Azra
Suri, Jasjit S.
author_facet Saba, Luca
Agarwal, Mohit
Patrick, Anubhav
Puvvula, Anudeep
Gupta, Suneet K.
Carriero, Alessandro
Laird, John R.
Kitas, George D.
Johri, Amer M.
Balestrieri, Antonella
Falaschi, Zeno
Paschè, Alessio
Viswanathan, Vijay
El-Baz, Ayman
Alam, Iqbal
Jain, Abhinav
Naidu, Subbaram
Oberleitner, Ronald
Khanna, Narendra N.
Bit, Arindam
Fatemi, Mostafa
Alizad, Azra
Suri, Jasjit S.
author_sort Saba, Luca
collection PubMed
description BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue features and characterise the disease, we therefore hypothesise that AI-based strategies can provide quick detection and classification, especially for radiological computed tomography (CT) lung scans. METHODOLOGY: Six models, two traditional machine learning (ML)-based (k-NN and RF), two transfer learning (TL)-based (VGG19 and InceptionV3), and the last two were our custom-designed deep learning (DL) models (CNN and iCNN), were developed for classification between COVID pneumonia (CoP) and non-COVID pneumonia (NCoP). K10 cross-validation (90% training: 10% testing) protocol on an Italian cohort of 100 CoP and 30 NCoP patients was used for performance evaluation and bispectrum analysis for CT lung characterisation. RESULTS: Using K10 protocol, our results showed the accuracy in the order of DL > TL > ML, ranging the six accuracies for k-NN, RF, VGG19, IV3, CNN, iCNN as 74.58 ± 2.44%, 96.84 ± 2.6, 94.84 ± 2.85%, 99.53 ± 0.75%, 99.53 ± 1.05%, and 99.69 ± 0.66%, respectively. The corresponding AUCs were 0.74, 0.94, 0.96, 0.99, 0.99, and 0.99 (p-values < 0.0001), respectively. Our Bispectrum-based characterisation system suggested CoP can be separated against NCoP using AI models. COVID risk severity stratification also showed a high correlation of 0.7270 (p < 0.0001) with clinical scores such as ground-glass opacities (GGO), further validating our AI models. CONCLUSIONS: We prove our hypothesis by demonstrating that all the six AI models successfully classified CoP against NCoP due to the strong presence of contrasting features such as ground-glass opacities (GGO), consolidations, and pleural effusion in CoP patients. Further, our online system takes < 2 s for inference. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11548-021-02317-0.
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spelling pubmed-78540272021-02-03 Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs Saba, Luca Agarwal, Mohit Patrick, Anubhav Puvvula, Anudeep Gupta, Suneet K. Carriero, Alessandro Laird, John R. Kitas, George D. Johri, Amer M. Balestrieri, Antonella Falaschi, Zeno Paschè, Alessio Viswanathan, Vijay El-Baz, Ayman Alam, Iqbal Jain, Abhinav Naidu, Subbaram Oberleitner, Ronald Khanna, Narendra N. Bit, Arindam Fatemi, Mostafa Alizad, Azra Suri, Jasjit S. Int J Comput Assist Radiol Surg Original Article BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue features and characterise the disease, we therefore hypothesise that AI-based strategies can provide quick detection and classification, especially for radiological computed tomography (CT) lung scans. METHODOLOGY: Six models, two traditional machine learning (ML)-based (k-NN and RF), two transfer learning (TL)-based (VGG19 and InceptionV3), and the last two were our custom-designed deep learning (DL) models (CNN and iCNN), were developed for classification between COVID pneumonia (CoP) and non-COVID pneumonia (NCoP). K10 cross-validation (90% training: 10% testing) protocol on an Italian cohort of 100 CoP and 30 NCoP patients was used for performance evaluation and bispectrum analysis for CT lung characterisation. RESULTS: Using K10 protocol, our results showed the accuracy in the order of DL > TL > ML, ranging the six accuracies for k-NN, RF, VGG19, IV3, CNN, iCNN as 74.58 ± 2.44%, 96.84 ± 2.6, 94.84 ± 2.85%, 99.53 ± 0.75%, 99.53 ± 1.05%, and 99.69 ± 0.66%, respectively. The corresponding AUCs were 0.74, 0.94, 0.96, 0.99, 0.99, and 0.99 (p-values < 0.0001), respectively. Our Bispectrum-based characterisation system suggested CoP can be separated against NCoP using AI models. COVID risk severity stratification also showed a high correlation of 0.7270 (p < 0.0001) with clinical scores such as ground-glass opacities (GGO), further validating our AI models. CONCLUSIONS: We prove our hypothesis by demonstrating that all the six AI models successfully classified CoP against NCoP due to the strong presence of contrasting features such as ground-glass opacities (GGO), consolidations, and pleural effusion in CoP patients. Further, our online system takes < 2 s for inference. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11548-021-02317-0. Springer International Publishing 2021-02-03 2021 /pmc/articles/PMC7854027/ /pubmed/33532975 http://dx.doi.org/10.1007/s11548-021-02317-0 Text en © CARS 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Saba, Luca
Agarwal, Mohit
Patrick, Anubhav
Puvvula, Anudeep
Gupta, Suneet K.
Carriero, Alessandro
Laird, John R.
Kitas, George D.
Johri, Amer M.
Balestrieri, Antonella
Falaschi, Zeno
Paschè, Alessio
Viswanathan, Vijay
El-Baz, Ayman
Alam, Iqbal
Jain, Abhinav
Naidu, Subbaram
Oberleitner, Ronald
Khanna, Narendra N.
Bit, Arindam
Fatemi, Mostafa
Alizad, Azra
Suri, Jasjit S.
Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title_full Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title_fullStr Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title_full_unstemmed Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title_short Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
title_sort six artificial intelligence paradigms for tissue characterisation and classification of non-covid-19 pneumonia against covid-19 pneumonia in computed tomography lungs
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7854027/
https://www.ncbi.nlm.nih.gov/pubmed/33532975
http://dx.doi.org/10.1007/s11548-021-02317-0
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