Cargando…
Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs
BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue feature...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7854027/ https://www.ncbi.nlm.nih.gov/pubmed/33532975 http://dx.doi.org/10.1007/s11548-021-02317-0 |
_version_ | 1783646052340989952 |
---|---|
author | Saba, Luca Agarwal, Mohit Patrick, Anubhav Puvvula, Anudeep Gupta, Suneet K. Carriero, Alessandro Laird, John R. Kitas, George D. Johri, Amer M. Balestrieri, Antonella Falaschi, Zeno Paschè, Alessio Viswanathan, Vijay El-Baz, Ayman Alam, Iqbal Jain, Abhinav Naidu, Subbaram Oberleitner, Ronald Khanna, Narendra N. Bit, Arindam Fatemi, Mostafa Alizad, Azra Suri, Jasjit S. |
author_facet | Saba, Luca Agarwal, Mohit Patrick, Anubhav Puvvula, Anudeep Gupta, Suneet K. Carriero, Alessandro Laird, John R. Kitas, George D. Johri, Amer M. Balestrieri, Antonella Falaschi, Zeno Paschè, Alessio Viswanathan, Vijay El-Baz, Ayman Alam, Iqbal Jain, Abhinav Naidu, Subbaram Oberleitner, Ronald Khanna, Narendra N. Bit, Arindam Fatemi, Mostafa Alizad, Azra Suri, Jasjit S. |
author_sort | Saba, Luca |
collection | PubMed |
description | BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue features and characterise the disease, we therefore hypothesise that AI-based strategies can provide quick detection and classification, especially for radiological computed tomography (CT) lung scans. METHODOLOGY: Six models, two traditional machine learning (ML)-based (k-NN and RF), two transfer learning (TL)-based (VGG19 and InceptionV3), and the last two were our custom-designed deep learning (DL) models (CNN and iCNN), were developed for classification between COVID pneumonia (CoP) and non-COVID pneumonia (NCoP). K10 cross-validation (90% training: 10% testing) protocol on an Italian cohort of 100 CoP and 30 NCoP patients was used for performance evaluation and bispectrum analysis for CT lung characterisation. RESULTS: Using K10 protocol, our results showed the accuracy in the order of DL > TL > ML, ranging the six accuracies for k-NN, RF, VGG19, IV3, CNN, iCNN as 74.58 ± 2.44%, 96.84 ± 2.6, 94.84 ± 2.85%, 99.53 ± 0.75%, 99.53 ± 1.05%, and 99.69 ± 0.66%, respectively. The corresponding AUCs were 0.74, 0.94, 0.96, 0.99, 0.99, and 0.99 (p-values < 0.0001), respectively. Our Bispectrum-based characterisation system suggested CoP can be separated against NCoP using AI models. COVID risk severity stratification also showed a high correlation of 0.7270 (p < 0.0001) with clinical scores such as ground-glass opacities (GGO), further validating our AI models. CONCLUSIONS: We prove our hypothesis by demonstrating that all the six AI models successfully classified CoP against NCoP due to the strong presence of contrasting features such as ground-glass opacities (GGO), consolidations, and pleural effusion in CoP patients. Further, our online system takes < 2 s for inference. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11548-021-02317-0. |
format | Online Article Text |
id | pubmed-7854027 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-78540272021-02-03 Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs Saba, Luca Agarwal, Mohit Patrick, Anubhav Puvvula, Anudeep Gupta, Suneet K. Carriero, Alessandro Laird, John R. Kitas, George D. Johri, Amer M. Balestrieri, Antonella Falaschi, Zeno Paschè, Alessio Viswanathan, Vijay El-Baz, Ayman Alam, Iqbal Jain, Abhinav Naidu, Subbaram Oberleitner, Ronald Khanna, Narendra N. Bit, Arindam Fatemi, Mostafa Alizad, Azra Suri, Jasjit S. Int J Comput Assist Radiol Surg Original Article BACKGROUND: COVID-19 pandemic has currently no vaccines. Thus, the only feasible solution for prevention relies on the detection of COVID-19-positive cases through quick and accurate testing. Since artificial intelligence (AI) offers the powerful mechanism to automatically extract the tissue features and characterise the disease, we therefore hypothesise that AI-based strategies can provide quick detection and classification, especially for radiological computed tomography (CT) lung scans. METHODOLOGY: Six models, two traditional machine learning (ML)-based (k-NN and RF), two transfer learning (TL)-based (VGG19 and InceptionV3), and the last two were our custom-designed deep learning (DL) models (CNN and iCNN), were developed for classification between COVID pneumonia (CoP) and non-COVID pneumonia (NCoP). K10 cross-validation (90% training: 10% testing) protocol on an Italian cohort of 100 CoP and 30 NCoP patients was used for performance evaluation and bispectrum analysis for CT lung characterisation. RESULTS: Using K10 protocol, our results showed the accuracy in the order of DL > TL > ML, ranging the six accuracies for k-NN, RF, VGG19, IV3, CNN, iCNN as 74.58 ± 2.44%, 96.84 ± 2.6, 94.84 ± 2.85%, 99.53 ± 0.75%, 99.53 ± 1.05%, and 99.69 ± 0.66%, respectively. The corresponding AUCs were 0.74, 0.94, 0.96, 0.99, 0.99, and 0.99 (p-values < 0.0001), respectively. Our Bispectrum-based characterisation system suggested CoP can be separated against NCoP using AI models. COVID risk severity stratification also showed a high correlation of 0.7270 (p < 0.0001) with clinical scores such as ground-glass opacities (GGO), further validating our AI models. CONCLUSIONS: We prove our hypothesis by demonstrating that all the six AI models successfully classified CoP against NCoP due to the strong presence of contrasting features such as ground-glass opacities (GGO), consolidations, and pleural effusion in CoP patients. Further, our online system takes < 2 s for inference. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11548-021-02317-0. Springer International Publishing 2021-02-03 2021 /pmc/articles/PMC7854027/ /pubmed/33532975 http://dx.doi.org/10.1007/s11548-021-02317-0 Text en © CARS 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Article Saba, Luca Agarwal, Mohit Patrick, Anubhav Puvvula, Anudeep Gupta, Suneet K. Carriero, Alessandro Laird, John R. Kitas, George D. Johri, Amer M. Balestrieri, Antonella Falaschi, Zeno Paschè, Alessio Viswanathan, Vijay El-Baz, Ayman Alam, Iqbal Jain, Abhinav Naidu, Subbaram Oberleitner, Ronald Khanna, Narendra N. Bit, Arindam Fatemi, Mostafa Alizad, Azra Suri, Jasjit S. Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title | Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title_full | Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title_fullStr | Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title_full_unstemmed | Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title_short | Six artificial intelligence paradigms for tissue characterisation and classification of non-COVID-19 pneumonia against COVID-19 pneumonia in computed tomography lungs |
title_sort | six artificial intelligence paradigms for tissue characterisation and classification of non-covid-19 pneumonia against covid-19 pneumonia in computed tomography lungs |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7854027/ https://www.ncbi.nlm.nih.gov/pubmed/33532975 http://dx.doi.org/10.1007/s11548-021-02317-0 |
work_keys_str_mv | AT sabaluca sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT agarwalmohit sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT patrickanubhav sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT puvvulaanudeep sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT guptasuneetk sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT carrieroalessandro sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT lairdjohnr sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT kitasgeorged sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT johriamerm sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT balestrieriantonella sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT falaschizeno sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT paschealessio sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT viswanathanvijay sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT elbazayman sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT alamiqbal sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT jainabhinav sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT naidusubbaram sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT oberleitnerronald sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT khannanarendran sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT bitarindam sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT fatemimostafa sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT alizadazra sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs AT surijasjits sixartificialintelligenceparadigmsfortissuecharacterisationandclassificationofnoncovid19pneumoniaagainstcovid19pneumoniaincomputedtomographylungs |