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BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, a...

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Detalles Bibliográficos
Autores principales: Wang, Beibei, Yang, Huayi, Sun, Jianan, Dou, Chuhao, Huang, Jian, Guo, Feng-Biao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7858672/
https://www.ncbi.nlm.nih.gov/pubmed/33552037
http://dx.doi.org/10.3389/fmicb.2021.593979
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author Wang, Beibei
Yang, Huayi
Sun, Jianan
Dou, Chuhao
Huang, Jian
Guo, Feng-Biao
author_facet Wang, Beibei
Yang, Huayi
Sun, Jianan
Dou, Chuhao
Huang, Jian
Guo, Feng-Biao
author_sort Wang, Beibei
collection PubMed
description Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, are a major obstacle for designing genetic circuit easily, quickly, and accurately. Here, a database termed BioMaster http://www.biomaster-uestc.cn was developed to extensively complement information about BioBrick parts, which includes 47,934 items of BioBrick parts from the international Genetically Engineered Machine (iGEM) Registry with more comprehensive information integrated from 10 databases, providing corresponding information about functions, activities, interactions, and related literature. Moreover, BioMaster is also a user-friendly platform for retrieval and analyses of relevant information on BioBrick parts.
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spelling pubmed-78586722021-02-05 BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts Wang, Beibei Yang, Huayi Sun, Jianan Dou, Chuhao Huang, Jian Guo, Feng-Biao Front Microbiol Microbiology Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, are a major obstacle for designing genetic circuit easily, quickly, and accurately. Here, a database termed BioMaster http://www.biomaster-uestc.cn was developed to extensively complement information about BioBrick parts, which includes 47,934 items of BioBrick parts from the international Genetically Engineered Machine (iGEM) Registry with more comprehensive information integrated from 10 databases, providing corresponding information about functions, activities, interactions, and related literature. Moreover, BioMaster is also a user-friendly platform for retrieval and analyses of relevant information on BioBrick parts. Frontiers Media S.A. 2021-01-21 /pmc/articles/PMC7858672/ /pubmed/33552037 http://dx.doi.org/10.3389/fmicb.2021.593979 Text en Copyright © 2021 Wang, Yang, Sun, Dou, Huang and Guo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Wang, Beibei
Yang, Huayi
Sun, Jianan
Dou, Chuhao
Huang, Jian
Guo, Feng-Biao
BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title_full BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title_fullStr BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title_full_unstemmed BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title_short BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
title_sort biomaster: an integrated database and analytic platform to provide comprehensive information about biobrick parts
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7858672/
https://www.ncbi.nlm.nih.gov/pubmed/33552037
http://dx.doi.org/10.3389/fmicb.2021.593979
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