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BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts
Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7858672/ https://www.ncbi.nlm.nih.gov/pubmed/33552037 http://dx.doi.org/10.3389/fmicb.2021.593979 |
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author | Wang, Beibei Yang, Huayi Sun, Jianan Dou, Chuhao Huang, Jian Guo, Feng-Biao |
author_facet | Wang, Beibei Yang, Huayi Sun, Jianan Dou, Chuhao Huang, Jian Guo, Feng-Biao |
author_sort | Wang, Beibei |
collection | PubMed |
description | Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, are a major obstacle for designing genetic circuit easily, quickly, and accurately. Here, a database termed BioMaster http://www.biomaster-uestc.cn was developed to extensively complement information about BioBrick parts, which includes 47,934 items of BioBrick parts from the international Genetically Engineered Machine (iGEM) Registry with more comprehensive information integrated from 10 databases, providing corresponding information about functions, activities, interactions, and related literature. Moreover, BioMaster is also a user-friendly platform for retrieval and analyses of relevant information on BioBrick parts. |
format | Online Article Text |
id | pubmed-7858672 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78586722021-02-05 BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts Wang, Beibei Yang, Huayi Sun, Jianan Dou, Chuhao Huang, Jian Guo, Feng-Biao Front Microbiol Microbiology Synthetic biology seeks to create new biological parts, devices, and systems, and to reconfigure existing natural biological systems for custom-designed purposes. The standardized BioBrick parts are the foundation of synthetic biology. The incomplete and flawed metadata of BioBrick parts, however, are a major obstacle for designing genetic circuit easily, quickly, and accurately. Here, a database termed BioMaster http://www.biomaster-uestc.cn was developed to extensively complement information about BioBrick parts, which includes 47,934 items of BioBrick parts from the international Genetically Engineered Machine (iGEM) Registry with more comprehensive information integrated from 10 databases, providing corresponding information about functions, activities, interactions, and related literature. Moreover, BioMaster is also a user-friendly platform for retrieval and analyses of relevant information on BioBrick parts. Frontiers Media S.A. 2021-01-21 /pmc/articles/PMC7858672/ /pubmed/33552037 http://dx.doi.org/10.3389/fmicb.2021.593979 Text en Copyright © 2021 Wang, Yang, Sun, Dou, Huang and Guo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Wang, Beibei Yang, Huayi Sun, Jianan Dou, Chuhao Huang, Jian Guo, Feng-Biao BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title | BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title_full | BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title_fullStr | BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title_full_unstemmed | BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title_short | BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts |
title_sort | biomaster: an integrated database and analytic platform to provide comprehensive information about biobrick parts |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7858672/ https://www.ncbi.nlm.nih.gov/pubmed/33552037 http://dx.doi.org/10.3389/fmicb.2021.593979 |
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