Cargando…
Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects
In this study, we analyzed the complete mitochondrial genome (mitogenome) of Speiredonia retorta, which is a pest and a member of the Lepidoptera order. In total, the S. retorta mitogenome was found to contain 15,652 base pairs encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, as well as a...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859238/ https://www.ncbi.nlm.nih.gov/pubmed/33536496 http://dx.doi.org/10.1038/s41598-021-82561-1 |
_version_ | 1783646686436917248 |
---|---|
author | Sun, Yu Huang, Hua Liu, Yudong Liu, Shanshan Xia, Jun Zhang, Kai Geng, Jian |
author_facet | Sun, Yu Huang, Hua Liu, Yudong Liu, Shanshan Xia, Jun Zhang, Kai Geng, Jian |
author_sort | Sun, Yu |
collection | PubMed |
description | In this study, we analyzed the complete mitochondrial genome (mitogenome) of Speiredonia retorta, which is a pest and a member of the Lepidoptera order. In total, the S. retorta mitogenome was found to contain 15,652 base pairs encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, as well as an adenine (A) + thymine (T)-rich region. These findings were consistent with the mitogenome composition of other lepidopterans, as we identified all 13 PCGs beginning at ATN codons. We also found that 11 PCGs terminated with canonical stop codons, whereas cox2 and nad4 exhibited incomplete termination codons. By analyzing the mitogenome of S. retorta using Bayesian inference (BI) and maximum likelihood (ML) models, we were able to further confirm that this species is a member of the Erebidae family. |
format | Online Article Text |
id | pubmed-7859238 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78592382021-02-04 Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects Sun, Yu Huang, Hua Liu, Yudong Liu, Shanshan Xia, Jun Zhang, Kai Geng, Jian Sci Rep Article In this study, we analyzed the complete mitochondrial genome (mitogenome) of Speiredonia retorta, which is a pest and a member of the Lepidoptera order. In total, the S. retorta mitogenome was found to contain 15,652 base pairs encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, as well as an adenine (A) + thymine (T)-rich region. These findings were consistent with the mitogenome composition of other lepidopterans, as we identified all 13 PCGs beginning at ATN codons. We also found that 11 PCGs terminated with canonical stop codons, whereas cox2 and nad4 exhibited incomplete termination codons. By analyzing the mitogenome of S. retorta using Bayesian inference (BI) and maximum likelihood (ML) models, we were able to further confirm that this species is a member of the Erebidae family. Nature Publishing Group UK 2021-02-03 /pmc/articles/PMC7859238/ /pubmed/33536496 http://dx.doi.org/10.1038/s41598-021-82561-1 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Sun, Yu Huang, Hua Liu, Yudong Liu, Shanshan Xia, Jun Zhang, Kai Geng, Jian Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title | Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title_full | Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title_fullStr | Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title_full_unstemmed | Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title_short | Organization and phylogenetic relationships of the mitochondrial genomes of Speiredonia retorta and other lepidopteran insects |
title_sort | organization and phylogenetic relationships of the mitochondrial genomes of speiredonia retorta and other lepidopteran insects |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859238/ https://www.ncbi.nlm.nih.gov/pubmed/33536496 http://dx.doi.org/10.1038/s41598-021-82561-1 |
work_keys_str_mv | AT sunyu organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT huanghua organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT liuyudong organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT liushanshan organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT xiajun organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT zhangkai organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects AT gengjian organizationandphylogeneticrelationshipsofthemitochondrialgenomesofspeiredoniaretortaandotherlepidopteraninsects |