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Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8
Thermophilic, facultatively anaerobic, xylanolytic bacterial strain DA-C8 (=JCM34211 =DSM111723), newly isolated from compost, shows strong beechwood xylan degradation ability. Whole-genome sequencing of strain DA-C8 on the Ion GeneStudio S5 system yielded 69 contigs with a total size of 3,110,565 b...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859314/ https://www.ncbi.nlm.nih.gov/pubmed/33553530 http://dx.doi.org/10.1016/j.dib.2021.106784 |
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author | Chhe, Chinda Uke, Ayaka Baramee, Sirilak Ungkulpasvich, Umbhorn Tachaapaikoon, Chakrit Pason, Patthra Waeonukul, Rattiya Ratanakhanokchai, Khanok Kosugi, Akihiko |
author_facet | Chhe, Chinda Uke, Ayaka Baramee, Sirilak Ungkulpasvich, Umbhorn Tachaapaikoon, Chakrit Pason, Patthra Waeonukul, Rattiya Ratanakhanokchai, Khanok Kosugi, Akihiko |
author_sort | Chhe, Chinda |
collection | PubMed |
description | Thermophilic, facultatively anaerobic, xylanolytic bacterial strain DA-C8 (=JCM34211 =DSM111723), newly isolated from compost, shows strong beechwood xylan degradation ability. Whole-genome sequencing of strain DA-C8 on the Ion GeneStudio S5 system yielded 69 contigs with a total size of 3,110,565 bp, 2,877 protein-coding sequences, and a G+C content of 52.3 mol%. Genome annotation revealed that strain DA-C8 possesses debranching enzymes, such as β-L-arabinofuranosidase and polygalacturonase, that are important for efficient degradation of xylan. As inferred from 16S rRNA sequences and average nucleotide identity values, the closest relatives of strain DA-C8 are Paenibacillus cisolokensis and P. chitinolyticus. The genomic data have been deposited at the National Center for Biotechnology Information (NCBI) under accession number BMAQ00000000. |
format | Online Article Text |
id | pubmed-7859314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-78593142021-02-05 Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 Chhe, Chinda Uke, Ayaka Baramee, Sirilak Ungkulpasvich, Umbhorn Tachaapaikoon, Chakrit Pason, Patthra Waeonukul, Rattiya Ratanakhanokchai, Khanok Kosugi, Akihiko Data Brief Data Article Thermophilic, facultatively anaerobic, xylanolytic bacterial strain DA-C8 (=JCM34211 =DSM111723), newly isolated from compost, shows strong beechwood xylan degradation ability. Whole-genome sequencing of strain DA-C8 on the Ion GeneStudio S5 system yielded 69 contigs with a total size of 3,110,565 bp, 2,877 protein-coding sequences, and a G+C content of 52.3 mol%. Genome annotation revealed that strain DA-C8 possesses debranching enzymes, such as β-L-arabinofuranosidase and polygalacturonase, that are important for efficient degradation of xylan. As inferred from 16S rRNA sequences and average nucleotide identity values, the closest relatives of strain DA-C8 are Paenibacillus cisolokensis and P. chitinolyticus. The genomic data have been deposited at the National Center for Biotechnology Information (NCBI) under accession number BMAQ00000000. Elsevier 2021-01-22 /pmc/articles/PMC7859314/ /pubmed/33553530 http://dx.doi.org/10.1016/j.dib.2021.106784 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Chhe, Chinda Uke, Ayaka Baramee, Sirilak Ungkulpasvich, Umbhorn Tachaapaikoon, Chakrit Pason, Patthra Waeonukul, Rattiya Ratanakhanokchai, Khanok Kosugi, Akihiko Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title | Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title_full | Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title_fullStr | Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title_full_unstemmed | Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title_short | Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8 |
title_sort | draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium paenibacillus sp. strain da-c8 |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859314/ https://www.ncbi.nlm.nih.gov/pubmed/33553530 http://dx.doi.org/10.1016/j.dib.2021.106784 |
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