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Research on Components Assembly Platform of Biological Sequences Alignment Algorithm

After years of development, the complexity of the biological sequence alignment algorithm is gradually increasing, and the lack of high abstract level domain research leads to the complexity of its algorithm development and improvement. By applying the idea of software components to the design and d...

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Detalles Bibliográficos
Autores principales: Shi, Haihe, Wu, Gang, Zhang, Xuchu, Wang, Jun, Shi, Haipeng, Xu, Shenghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859483/
https://www.ncbi.nlm.nih.gov/pubmed/33552143
http://dx.doi.org/10.3389/fgene.2020.630923
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author Shi, Haihe
Wu, Gang
Zhang, Xuchu
Wang, Jun
Shi, Haipeng
Xu, Shenghua
author_facet Shi, Haihe
Wu, Gang
Zhang, Xuchu
Wang, Jun
Shi, Haipeng
Xu, Shenghua
author_sort Shi, Haihe
collection PubMed
description After years of development, the complexity of the biological sequence alignment algorithm is gradually increasing, and the lack of high abstract level domain research leads to the complexity of its algorithm development and improvement. By applying the idea of software components to the design and development of algorithms, the development efficiency and reliability of biological sequence alignment algorithms can be effectively improved. The component assembly platform applies related assembly technology, which simplifies the operation difficulty of component assembly and facilitates the maintenance and optimization of the algorithm. At the same time, a friendly visual interface is used to intuitively complete the assembly of algorithm components, and an executable sequence alignment algorithm program is obtained, which can directly carry out alignment computing.
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spelling pubmed-78594832021-02-05 Research on Components Assembly Platform of Biological Sequences Alignment Algorithm Shi, Haihe Wu, Gang Zhang, Xuchu Wang, Jun Shi, Haipeng Xu, Shenghua Front Genet Genetics After years of development, the complexity of the biological sequence alignment algorithm is gradually increasing, and the lack of high abstract level domain research leads to the complexity of its algorithm development and improvement. By applying the idea of software components to the design and development of algorithms, the development efficiency and reliability of biological sequence alignment algorithms can be effectively improved. The component assembly platform applies related assembly technology, which simplifies the operation difficulty of component assembly and facilitates the maintenance and optimization of the algorithm. At the same time, a friendly visual interface is used to intuitively complete the assembly of algorithm components, and an executable sequence alignment algorithm program is obtained, which can directly carry out alignment computing. Frontiers Media S.A. 2021-01-21 /pmc/articles/PMC7859483/ /pubmed/33552143 http://dx.doi.org/10.3389/fgene.2020.630923 Text en Copyright © 2021 Shi, Wu, Zhang, Wang, Shi and Xu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Shi, Haihe
Wu, Gang
Zhang, Xuchu
Wang, Jun
Shi, Haipeng
Xu, Shenghua
Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title_full Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title_fullStr Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title_full_unstemmed Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title_short Research on Components Assembly Platform of Biological Sequences Alignment Algorithm
title_sort research on components assembly platform of biological sequences alignment algorithm
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859483/
https://www.ncbi.nlm.nih.gov/pubmed/33552143
http://dx.doi.org/10.3389/fgene.2020.630923
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