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A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()

We present preliminary results on an all-Ireland network modelling approach to simulate the spreading the Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2), commonly known as the coronavirus. In the model, nodes correspond to locations or communities that are connected by links indicating...

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Autores principales: Humphries, Rory, Spillane, Mary, Mulchrone, Kieran, Wieczorek, Sebastian, O’Riordain, Micheal, Hövel, Philipp
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859709/
https://www.ncbi.nlm.nih.gov/pubmed/33558856
http://dx.doi.org/10.1016/j.idm.2021.01.004
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author Humphries, Rory
Spillane, Mary
Mulchrone, Kieran
Wieczorek, Sebastian
O’Riordain, Micheal
Hövel, Philipp
author_facet Humphries, Rory
Spillane, Mary
Mulchrone, Kieran
Wieczorek, Sebastian
O’Riordain, Micheal
Hövel, Philipp
author_sort Humphries, Rory
collection PubMed
description We present preliminary results on an all-Ireland network modelling approach to simulate the spreading the Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2), commonly known as the coronavirus. In the model, nodes correspond to locations or communities that are connected by links indicating travel and commuting between different locations. While this proposed modelling framework can be applied on all levels of spatial granularity and different countries, we consider Ireland as a case study. The network comprises 3440 electoral divisions (EDs) of the Republic of Ireland and 890 superoutput areas (SOAs) for Northern Ireland, which corresponds to local administrative units below the NUTS 3 regions. The local dynamics within each node follows a phenomenological SIRX compartmental model including classes of Susceptibles, Infected, Recovered and Quarantined (X) inspired from Science 368, 742 (2020). For better comparison to empirical data, we extended that model by a class of Deaths. We consider various scenarios including the 5-phase roadmap for Ireland. In addition, as proof of concept, we investigate the effect of dynamic interventions that aim to keep the number of infected below a given threshold. This is achieved by dynamically adjusting containment measures on a national scale, which could also be implemented at a regional (county) or local (ED/SOA) level. We find that – in principle – dynamic interventions are capable to limit the impact of future waves of outbreaks, but on the downside, in the absence of a vaccine, such a strategy can last several years until herd immunity is reached.
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spelling pubmed-78597092021-02-04 A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland() Humphries, Rory Spillane, Mary Mulchrone, Kieran Wieczorek, Sebastian O’Riordain, Micheal Hövel, Philipp Infect Dis Model Original Research Article We present preliminary results on an all-Ireland network modelling approach to simulate the spreading the Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2), commonly known as the coronavirus. In the model, nodes correspond to locations or communities that are connected by links indicating travel and commuting between different locations. While this proposed modelling framework can be applied on all levels of spatial granularity and different countries, we consider Ireland as a case study. The network comprises 3440 electoral divisions (EDs) of the Republic of Ireland and 890 superoutput areas (SOAs) for Northern Ireland, which corresponds to local administrative units below the NUTS 3 regions. The local dynamics within each node follows a phenomenological SIRX compartmental model including classes of Susceptibles, Infected, Recovered and Quarantined (X) inspired from Science 368, 742 (2020). For better comparison to empirical data, we extended that model by a class of Deaths. We consider various scenarios including the 5-phase roadmap for Ireland. In addition, as proof of concept, we investigate the effect of dynamic interventions that aim to keep the number of infected below a given threshold. This is achieved by dynamically adjusting containment measures on a national scale, which could also be implemented at a regional (county) or local (ED/SOA) level. We find that – in principle – dynamic interventions are capable to limit the impact of future waves of outbreaks, but on the downside, in the absence of a vaccine, such a strategy can last several years until herd immunity is reached. KeAi Publishing 2021-02-04 /pmc/articles/PMC7859709/ /pubmed/33558856 http://dx.doi.org/10.1016/j.idm.2021.01.004 Text en © 2021 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research Article
Humphries, Rory
Spillane, Mary
Mulchrone, Kieran
Wieczorek, Sebastian
O’Riordain, Micheal
Hövel, Philipp
A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title_full A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title_fullStr A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title_full_unstemmed A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title_short A metapopulation network model for the spreading of SARS-CoV-2: Case study for Ireland()
title_sort metapopulation network model for the spreading of sars-cov-2: case study for ireland()
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7859709/
https://www.ncbi.nlm.nih.gov/pubmed/33558856
http://dx.doi.org/10.1016/j.idm.2021.01.004
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