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Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7860527/ https://www.ncbi.nlm.nih.gov/pubmed/33277966 http://dx.doi.org/10.1002/iid3.379 |
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author | Xiong, Ying Si, Yu Feng, Yisi Zhuo, Shipei Cui, Bozhen Zhang, Zhigang |
author_facet | Xiong, Ying Si, Yu Feng, Yisi Zhuo, Shipei Cui, Bozhen Zhang, Zhigang |
author_sort | Xiong, Ying |
collection | PubMed |
description | BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in HNSCC. METHODS: RNA‐seq data and clinical features of 545 HNSCC cases were obtained from The Cancer Genome Atlas database. A regulatory network of transcription factors‐lipid metabolism genes and a risk prognostic model of lipid metabolism‐related genes was developed using bioinformatics and Cox regression modeling. We used tumor immune estimation resource to analyze immune cell infiltration in patients with HNSCC based on the prognostic index (PI) of lipid metabolism‐related genes. RESULTS: A total of 136 differentially expressed lipid metabolism genes were identified. Of these, 23 are related to prognosis. In addition to predicting HNSCC prognosis, 11 lipid metabolism‐related genes (ARSI, CYP27B1, CYP2D6, DGKG, DHCR7, LPIN1, PHYH, PIP5K1B, PLA2G2D, RDH16, and TRIB3) also affect HNSCC clinical features (stage, gender, and pathological stage). The PI of lipid metabolism‐related genes embodied the state of HNSCC tumor immune microenvironment. |
format | Online Article Text |
id | pubmed-7860527 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78605272021-02-05 Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma Xiong, Ying Si, Yu Feng, Yisi Zhuo, Shipei Cui, Bozhen Zhang, Zhigang Immun Inflamm Dis Original Research BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in HNSCC. METHODS: RNA‐seq data and clinical features of 545 HNSCC cases were obtained from The Cancer Genome Atlas database. A regulatory network of transcription factors‐lipid metabolism genes and a risk prognostic model of lipid metabolism‐related genes was developed using bioinformatics and Cox regression modeling. We used tumor immune estimation resource to analyze immune cell infiltration in patients with HNSCC based on the prognostic index (PI) of lipid metabolism‐related genes. RESULTS: A total of 136 differentially expressed lipid metabolism genes were identified. Of these, 23 are related to prognosis. In addition to predicting HNSCC prognosis, 11 lipid metabolism‐related genes (ARSI, CYP27B1, CYP2D6, DGKG, DHCR7, LPIN1, PHYH, PIP5K1B, PLA2G2D, RDH16, and TRIB3) also affect HNSCC clinical features (stage, gender, and pathological stage). The PI of lipid metabolism‐related genes embodied the state of HNSCC tumor immune microenvironment. John Wiley and Sons Inc. 2020-12-05 /pmc/articles/PMC7860527/ /pubmed/33277966 http://dx.doi.org/10.1002/iid3.379 Text en © 2020 The Authors. Immunity, Inflammation and Disease published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Xiong, Ying Si, Yu Feng, Yisi Zhuo, Shipei Cui, Bozhen Zhang, Zhigang Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title | Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title_full | Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title_fullStr | Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title_full_unstemmed | Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title_short | Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
title_sort | prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7860527/ https://www.ncbi.nlm.nih.gov/pubmed/33277966 http://dx.doi.org/10.1002/iid3.379 |
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