Cargando…

Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma

BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in...

Descripción completa

Detalles Bibliográficos
Autores principales: Xiong, Ying, Si, Yu, Feng, Yisi, Zhuo, Shipei, Cui, Bozhen, Zhang, Zhigang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7860527/
https://www.ncbi.nlm.nih.gov/pubmed/33277966
http://dx.doi.org/10.1002/iid3.379
_version_ 1783646907683307520
author Xiong, Ying
Si, Yu
Feng, Yisi
Zhuo, Shipei
Cui, Bozhen
Zhang, Zhigang
author_facet Xiong, Ying
Si, Yu
Feng, Yisi
Zhuo, Shipei
Cui, Bozhen
Zhang, Zhigang
author_sort Xiong, Ying
collection PubMed
description BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in HNSCC. METHODS: RNA‐seq data and clinical features of 545 HNSCC cases were obtained from The Cancer Genome Atlas database. A regulatory network of transcription factors‐lipid metabolism genes and a risk prognostic model of lipid metabolism‐related genes was developed using bioinformatics and Cox regression modeling. We used tumor immune estimation resource to analyze immune cell infiltration in patients with HNSCC based on the prognostic index (PI) of lipid metabolism‐related genes. RESULTS: A total of 136 differentially expressed lipid metabolism genes were identified. Of these, 23 are related to prognosis. In addition to predicting HNSCC prognosis, 11 lipid metabolism‐related genes (ARSI, CYP27B1, CYP2D6, DGKG, DHCR7, LPIN1, PHYH, PIP5K1B, PLA2G2D, RDH16, and TRIB3) also affect HNSCC clinical features (stage, gender, and pathological stage). The PI of lipid metabolism‐related genes embodied the state of HNSCC tumor immune microenvironment.
format Online
Article
Text
id pubmed-7860527
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-78605272021-02-05 Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma Xiong, Ying Si, Yu Feng, Yisi Zhuo, Shipei Cui, Bozhen Zhang, Zhigang Immun Inflamm Dis Original Research BACKGROUND: Altered lipid metabolism is involved in the development of many tumors. However, the role of dissimilar lipid metabolism in head and neck squamous cell carcinoma (HNSCC) is not fully established. AIMS: Here, we sought to determine the prognostic value of lipid metabolism‐related genes in HNSCC. METHODS: RNA‐seq data and clinical features of 545 HNSCC cases were obtained from The Cancer Genome Atlas database. A regulatory network of transcription factors‐lipid metabolism genes and a risk prognostic model of lipid metabolism‐related genes was developed using bioinformatics and Cox regression modeling. We used tumor immune estimation resource to analyze immune cell infiltration in patients with HNSCC based on the prognostic index (PI) of lipid metabolism‐related genes. RESULTS: A total of 136 differentially expressed lipid metabolism genes were identified. Of these, 23 are related to prognosis. In addition to predicting HNSCC prognosis, 11 lipid metabolism‐related genes (ARSI, CYP27B1, CYP2D6, DGKG, DHCR7, LPIN1, PHYH, PIP5K1B, PLA2G2D, RDH16, and TRIB3) also affect HNSCC clinical features (stage, gender, and pathological stage). The PI of lipid metabolism‐related genes embodied the state of HNSCC tumor immune microenvironment. John Wiley and Sons Inc. 2020-12-05 /pmc/articles/PMC7860527/ /pubmed/33277966 http://dx.doi.org/10.1002/iid3.379 Text en © 2020 The Authors. Immunity, Inflammation and Disease published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Xiong, Ying
Si, Yu
Feng, Yisi
Zhuo, Shipei
Cui, Bozhen
Zhang, Zhigang
Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title_full Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title_fullStr Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title_full_unstemmed Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title_short Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
title_sort prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7860527/
https://www.ncbi.nlm.nih.gov/pubmed/33277966
http://dx.doi.org/10.1002/iid3.379
work_keys_str_mv AT xiongying prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma
AT siyu prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma
AT fengyisi prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma
AT zhuoshipei prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma
AT cuibozhen prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma
AT zhangzhigang prognosticvalueoflipidmetabolismrelatedgenesinheadandnecksquamouscellcarcinoma