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Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development

SARS-COV-2 has roused the scientific community with a call to action to combat the growing pandemic. At the time of this writing, there are as yet no novel antiviral agents or approved vaccines available for deployment as a frontline defense. Understanding the pathobiology of COVID-19 could aid scie...

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Autores principales: Keshavarzi Arshadi, Arash, Webb, Julia, Salem, Milad, Cruz, Emmanuel, Calad-Thomson, Stacie, Ghadirian, Niloofar, Collins, Jennifer, Diez-Cecilia, Elena, Kelly, Brendan, Goodarzi, Hani, Yuan, Jiann Shiun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7861281/
https://www.ncbi.nlm.nih.gov/pubmed/33733182
http://dx.doi.org/10.3389/frai.2020.00065
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author Keshavarzi Arshadi, Arash
Webb, Julia
Salem, Milad
Cruz, Emmanuel
Calad-Thomson, Stacie
Ghadirian, Niloofar
Collins, Jennifer
Diez-Cecilia, Elena
Kelly, Brendan
Goodarzi, Hani
Yuan, Jiann Shiun
author_facet Keshavarzi Arshadi, Arash
Webb, Julia
Salem, Milad
Cruz, Emmanuel
Calad-Thomson, Stacie
Ghadirian, Niloofar
Collins, Jennifer
Diez-Cecilia, Elena
Kelly, Brendan
Goodarzi, Hani
Yuan, Jiann Shiun
author_sort Keshavarzi Arshadi, Arash
collection PubMed
description SARS-COV-2 has roused the scientific community with a call to action to combat the growing pandemic. At the time of this writing, there are as yet no novel antiviral agents or approved vaccines available for deployment as a frontline defense. Understanding the pathobiology of COVID-19 could aid scientists in their discovery of potent antivirals by elucidating unexplored viral pathways. One method for accomplishing this is the leveraging of computational methods to discover new candidate drugs and vaccines in silico. In the last decade, machine learning-based models, trained on specific biomolecules, have offered inexpensive and rapid implementation methods for the discovery of effective viral therapies. Given a target biomolecule, these models are capable of predicting inhibitor candidates in a structural-based manner. If enough data are presented to a model, it can aid the search for a drug or vaccine candidate by identifying patterns within the data. In this review, we focus on the recent advances of COVID-19 drug and vaccine development using artificial intelligence and the potential of intelligent training for the discovery of COVID-19 therapeutics. To facilitate applications of deep learning for SARS-COV-2, we highlight multiple molecular targets of COVID-19, inhibition of which may increase patient survival. Moreover, we present CoronaDB-AI, a dataset of compounds, peptides, and epitopes discovered either in silico or in vitro that can be potentially used for training models in order to extract COVID-19 treatment. The information and datasets provided in this review can be used to train deep learning-based models and accelerate the discovery of effective viral therapies.
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spelling pubmed-78612812021-03-16 Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development Keshavarzi Arshadi, Arash Webb, Julia Salem, Milad Cruz, Emmanuel Calad-Thomson, Stacie Ghadirian, Niloofar Collins, Jennifer Diez-Cecilia, Elena Kelly, Brendan Goodarzi, Hani Yuan, Jiann Shiun Front Artif Intell Artificial Intelligence SARS-COV-2 has roused the scientific community with a call to action to combat the growing pandemic. At the time of this writing, there are as yet no novel antiviral agents or approved vaccines available for deployment as a frontline defense. Understanding the pathobiology of COVID-19 could aid scientists in their discovery of potent antivirals by elucidating unexplored viral pathways. One method for accomplishing this is the leveraging of computational methods to discover new candidate drugs and vaccines in silico. In the last decade, machine learning-based models, trained on specific biomolecules, have offered inexpensive and rapid implementation methods for the discovery of effective viral therapies. Given a target biomolecule, these models are capable of predicting inhibitor candidates in a structural-based manner. If enough data are presented to a model, it can aid the search for a drug or vaccine candidate by identifying patterns within the data. In this review, we focus on the recent advances of COVID-19 drug and vaccine development using artificial intelligence and the potential of intelligent training for the discovery of COVID-19 therapeutics. To facilitate applications of deep learning for SARS-COV-2, we highlight multiple molecular targets of COVID-19, inhibition of which may increase patient survival. Moreover, we present CoronaDB-AI, a dataset of compounds, peptides, and epitopes discovered either in silico or in vitro that can be potentially used for training models in order to extract COVID-19 treatment. The information and datasets provided in this review can be used to train deep learning-based models and accelerate the discovery of effective viral therapies. Frontiers Media S.A. 2020-08-18 /pmc/articles/PMC7861281/ /pubmed/33733182 http://dx.doi.org/10.3389/frai.2020.00065 Text en Copyright © 2020 Keshavarzi Arshadi, Webb, Salem, Cruz, Calad-Thomson, Ghadirian, Collins, Diez-Cecilia, Kelly, Goodarzi and Yuan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Artificial Intelligence
Keshavarzi Arshadi, Arash
Webb, Julia
Salem, Milad
Cruz, Emmanuel
Calad-Thomson, Stacie
Ghadirian, Niloofar
Collins, Jennifer
Diez-Cecilia, Elena
Kelly, Brendan
Goodarzi, Hani
Yuan, Jiann Shiun
Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title_full Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title_fullStr Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title_full_unstemmed Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title_short Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development
title_sort artificial intelligence for covid-19 drug discovery and vaccine development
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7861281/
https://www.ncbi.nlm.nih.gov/pubmed/33733182
http://dx.doi.org/10.3389/frai.2020.00065
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