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Classification of paediatric brain tumours by diffusion weighted imaging and machine learning

To determine if apparent diffusion coefficients (ADC) can discriminate between posterior fossa brain tumours on a multicentre basis. A total of 124 paediatric patients with posterior fossa tumours (including 55 Medulloblastomas, 36 Pilocytic Astrocytomas and 26 Ependymomas) were scanned using diffus...

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Autores principales: Novak, Jan, Zarinabad, Niloufar, Rose, Heather, Arvanitis, Theodoros, MacPherson, Lesley, Pinkey, Benjamin, Oates, Adam, Hales, Patrick, Grundy, Richard, Auer, Dorothee, Gutierrez, Daniel Rodriguez, Jaspan, Tim, Avula, Shivaram, Abernethy, Laurence, Kaur, Ramneek, Hargrave, Darren, Mitra, Dipayan, Bailey, Simon, Davies, Nigel, Clark, Christopher, Peet, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7862387/
https://www.ncbi.nlm.nih.gov/pubmed/33542327
http://dx.doi.org/10.1038/s41598-021-82214-3
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author Novak, Jan
Zarinabad, Niloufar
Rose, Heather
Arvanitis, Theodoros
MacPherson, Lesley
Pinkey, Benjamin
Oates, Adam
Hales, Patrick
Grundy, Richard
Auer, Dorothee
Gutierrez, Daniel Rodriguez
Jaspan, Tim
Avula, Shivaram
Abernethy, Laurence
Kaur, Ramneek
Hargrave, Darren
Mitra, Dipayan
Bailey, Simon
Davies, Nigel
Clark, Christopher
Peet, Andrew
author_facet Novak, Jan
Zarinabad, Niloufar
Rose, Heather
Arvanitis, Theodoros
MacPherson, Lesley
Pinkey, Benjamin
Oates, Adam
Hales, Patrick
Grundy, Richard
Auer, Dorothee
Gutierrez, Daniel Rodriguez
Jaspan, Tim
Avula, Shivaram
Abernethy, Laurence
Kaur, Ramneek
Hargrave, Darren
Mitra, Dipayan
Bailey, Simon
Davies, Nigel
Clark, Christopher
Peet, Andrew
author_sort Novak, Jan
collection PubMed
description To determine if apparent diffusion coefficients (ADC) can discriminate between posterior fossa brain tumours on a multicentre basis. A total of 124 paediatric patients with posterior fossa tumours (including 55 Medulloblastomas, 36 Pilocytic Astrocytomas and 26 Ependymomas) were scanned using diffusion weighted imaging across 12 different hospitals using a total of 18 different scanners. Apparent diffusion coefficient maps were produced and histogram data was extracted from tumour regions of interest. Total histograms and histogram metrics (mean, variance, skew, kurtosis and 10th, 20th and 50th quantiles) were used as data input for classifiers with accuracy determined by tenfold cross validation. Mean ADC values from the tumour regions of interest differed between tumour types, (ANOVA P < 0.001). A cut off value for mean ADC between Ependymomas and Medulloblastomas was found to be of 0.984 × 10(−3) mm(2) s(−1) with sensitivity 80.8% and specificity 80.0%. Overall classification for the ADC histogram metrics were 85% using Naïve Bayes and 84% for Random Forest classifiers. The most commonly occurring posterior fossa paediatric brain tumours can be classified using Apparent Diffusion Coefficient histogram values to a high accuracy on a multicentre basis.
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spelling pubmed-78623872021-02-05 Classification of paediatric brain tumours by diffusion weighted imaging and machine learning Novak, Jan Zarinabad, Niloufar Rose, Heather Arvanitis, Theodoros MacPherson, Lesley Pinkey, Benjamin Oates, Adam Hales, Patrick Grundy, Richard Auer, Dorothee Gutierrez, Daniel Rodriguez Jaspan, Tim Avula, Shivaram Abernethy, Laurence Kaur, Ramneek Hargrave, Darren Mitra, Dipayan Bailey, Simon Davies, Nigel Clark, Christopher Peet, Andrew Sci Rep Article To determine if apparent diffusion coefficients (ADC) can discriminate between posterior fossa brain tumours on a multicentre basis. A total of 124 paediatric patients with posterior fossa tumours (including 55 Medulloblastomas, 36 Pilocytic Astrocytomas and 26 Ependymomas) were scanned using diffusion weighted imaging across 12 different hospitals using a total of 18 different scanners. Apparent diffusion coefficient maps were produced and histogram data was extracted from tumour regions of interest. Total histograms and histogram metrics (mean, variance, skew, kurtosis and 10th, 20th and 50th quantiles) were used as data input for classifiers with accuracy determined by tenfold cross validation. Mean ADC values from the tumour regions of interest differed between tumour types, (ANOVA P < 0.001). A cut off value for mean ADC between Ependymomas and Medulloblastomas was found to be of 0.984 × 10(−3) mm(2) s(−1) with sensitivity 80.8% and specificity 80.0%. Overall classification for the ADC histogram metrics were 85% using Naïve Bayes and 84% for Random Forest classifiers. The most commonly occurring posterior fossa paediatric brain tumours can be classified using Apparent Diffusion Coefficient histogram values to a high accuracy on a multicentre basis. Nature Publishing Group UK 2021-02-04 /pmc/articles/PMC7862387/ /pubmed/33542327 http://dx.doi.org/10.1038/s41598-021-82214-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Novak, Jan
Zarinabad, Niloufar
Rose, Heather
Arvanitis, Theodoros
MacPherson, Lesley
Pinkey, Benjamin
Oates, Adam
Hales, Patrick
Grundy, Richard
Auer, Dorothee
Gutierrez, Daniel Rodriguez
Jaspan, Tim
Avula, Shivaram
Abernethy, Laurence
Kaur, Ramneek
Hargrave, Darren
Mitra, Dipayan
Bailey, Simon
Davies, Nigel
Clark, Christopher
Peet, Andrew
Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title_full Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title_fullStr Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title_full_unstemmed Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title_short Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
title_sort classification of paediatric brain tumours by diffusion weighted imaging and machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7862387/
https://www.ncbi.nlm.nih.gov/pubmed/33542327
http://dx.doi.org/10.1038/s41598-021-82214-3
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