Cargando…

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

Antimicrobial resistance (AMR) is a significant and growing public health threat. Sequencing of bacterial isolates is becoming more common, and therefore automatic identification of resistant bacterial strains is of pivotal importance for efficient, wide-spread AMR detection. To support this approac...

Descripción completa

Detalles Bibliográficos
Autores principales:	Marini, Simone, Oliva, Marco, Slizovskiy, Ilya B., Noyes, Noelle Robertson, Boucher, Christina, Prosperi, Mattia
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7862766/ https://www.ncbi.nlm.nih.gov/pubmed/33552147 http://dx.doi.org/10.3389/fgene.2021.564186

Ejemplares similares

AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data
por: Marini, Simone, et al.
Publicado: (2022)

Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes
por: Slizovskiy, Ilya B., et al.
Publicado: (2022)

The K-mer antibiotic resistance gene variant analyzer (KARGVA)
por: Marini, Simone, et al.
Publicado: (2023)

ggMOB: Elucidation of genomic conjugative features and associated cargo genes across bacterial genera using genus-genus mobilization networks
por: Nayar, Gowri, et al.
Publicado: (2022)

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?
por: Slizovskiy, Ilya B., et al.
Publicado: (2020)

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing
por: Bonin, Nathalie, et al.
Publicado: (2022)

Syotti: scalable bait design for DNA enrichment
por: Alanko, Jarno N, et al.
Publicado: (2022)

Fast and exact quantification of motif occurrences in biological sequences
por: Prosperi, Mattia, et al.
Publicado: (2021)

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
por: Lakin, Steven M., et al.
Publicado: (2019)

KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing
por: Barquero, Alexander, et al.
Publicado: (2022)

The Identification of Metal Ion Ligand-Binding Residues by Adding the Reclassified Relative Solvent Accessibility
por: Hu, Xiuzhen, et al.
Publicado: (2020)

MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data
por: Nazzicari, Nelson, et al.
Publicado: (2019)

Genes Contributing to Genetic Variation of Muscling in Sheep
por: Tellam, Ross L., et al.
Publicado: (2012)

A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis
por: Mavian, Carla, et al.
Publicado: (2020)

Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis
por: Mavian, Carla, et al.
Publicado: (2020)

Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis”
por: Mavian, Carla, et al.
Publicado: (2020)

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
por: Doster, Enrique, et al.
Publicado: (2019)

MEGARes: an antimicrobial resistance database for high throughput sequencing
por: Lakin, Steven M., et al.
Publicado: (2017)

Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN)
por: Ghosh, Shantanu, et al.
Publicado: (2021)

Effects of Pathogenic Variations in the Human Rhodopsin Gene (hRHO) on the Predicted Accessibility for a Lead Candidate Ribozyme
por: Froebel, Beau R., et al.
Publicado: (2017)

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders
por: Rancati, Simone, et al.
Publicado: (2023)

Exploring the potential benefits of stratified false discovery rates for region-based testing of association with rare genetic variation
por: Xu, ChangJiang, et al.
Publicado: (2014)

Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview
por: de Abreu, Vinicius A. C., et al.
Publicado: (2021)

Corrigendum: Exploring the potential benefits of stratified false discovery rates for region-based testing of association with rare genetic variation
por: Greenwood, Celia M. T.
Publicado: (2014)

Editorial: Antimicrobial resistance genomics in bacterial zoonotic pathogens
por: Srednik, Mariela E., et al.
Publicado: (2023)

Genomic Variations Explorer (GenVarX): a toolset for annotating promoter and CNV regions using genotypic and phenotypic differences
por: Chan, Yen On, et al.
Publicado: (2023)

Efficiency of IRAP and ITS-RFLP marker systems in accessing genetic variation of Pyrenophora graminea
por: Zein, Imad, et al.
Publicado: (2010)

Current Trends in Experimental and Computational Approaches to Combat Antimicrobial Resistance
por: Imchen, Madangchanok, et al.
Publicado: (2020)

Comparative (Within Species) Genomics of the Vitis vinifera L. Terpene Synthase Family to Explore the Impact of Genotypic Variation Using Phased Diploid Genomes
por: Smit, Samuel Jacobus, et al.
Publicado: (2020)

Accessing Livestock Resources in Ensembl
por: Martin, Fergal J., et al.
Publicado: (2021)

Evaluation of the Impact of Antimicrobial Use Protocols in Porcine Reproductive and Respiratory Syndrome Virus-Infected Swine on Phenotypic Antimicrobial Resistance Patterns
por: Odland, Carissa A., et al.
Publicado: (2022)

Origin Sample Prediction and Spatial Modeling of Antimicrobial Resistance in Metagenomic Sequencing Data
por: Zhelyazkova, Maya, et al.
Publicado: (2021)

Modulation of sol mRNA expression by the long non-coding RNA Assolrna in Clostridium saccharoperbutylacetonicum affects solvent formation
por: Baur, Saskia Tabea, et al.
Publicado: (2022)

Rapid Synthesis and Screening of Chemically Activated Transcription Factors with GFP-based Reporters
por: McIsaac, R. Scott, et al.
Publicado: (2013)

The Chromatin Accessibility Landscape of Adult Rat
por: Yuan, Yue, et al.
Publicado: (2021)

Genetic interaction networks: better understand to better predict
por: Boucher, Benjamin, et al.
Publicado: (2013)

Genome-wide association analysis of tan spot disease resistance in durum wheat accessions from Tunisia
por: Laribi, Marwa, et al.
Publicado: (2023)

Copy Number Variation Mapping and Genomic Variation of Autochthonous and Commercial Turkey Populations
por: Strillacci, Maria G., et al.
Publicado: (2019)

Editorial: Personal Genomes: Accessing, Sharing, and Interpretation
por: Corpas, Manuel, et al.
Publicado: (2021)

Development of a Prediction Model for Antibiotic-Resistant Urinary Tract Infections Using Integrated Electronic Health Records from Multiple Clinics in North-Central Florida
por: Rich, Shannan N., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_pm43dqbr2esbukkkanphi4l8iv