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Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence

Machine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance...

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Autores principales: Maloca, Peter M., Müller, Philipp L., Lee, Aaron Y., Tufail, Adnan, Balaskas, Konstantinos, Niklaus, Stephanie, Kaiser, Pascal, Suter, Susanne, Zarranz-Ventura, Javier, Egan, Catherine, Scholl, Hendrik P. N., Schnitzer, Tobias K., Singer, Thomas, Hasler, Pascal W., Denk, Nora
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7864998/
https://www.ncbi.nlm.nih.gov/pubmed/33547415
http://dx.doi.org/10.1038/s42003-021-01697-y
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author Maloca, Peter M.
Müller, Philipp L.
Lee, Aaron Y.
Tufail, Adnan
Balaskas, Konstantinos
Niklaus, Stephanie
Kaiser, Pascal
Suter, Susanne
Zarranz-Ventura, Javier
Egan, Catherine
Scholl, Hendrik P. N.
Schnitzer, Tobias K.
Singer, Thomas
Hasler, Pascal W.
Denk, Nora
author_facet Maloca, Peter M.
Müller, Philipp L.
Lee, Aaron Y.
Tufail, Adnan
Balaskas, Konstantinos
Niklaus, Stephanie
Kaiser, Pascal
Suter, Susanne
Zarranz-Ventura, Javier
Egan, Catherine
Scholl, Hendrik P. N.
Schnitzer, Tobias K.
Singer, Thomas
Hasler, Pascal W.
Denk, Nora
author_sort Maloca, Peter M.
collection PubMed
description Machine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance Explainability (T-REX) technique. The proposed application was based on three components: ground truth generation by multiple graders, calculation of Hamming distances among graders and the machine learning algorithm, as well as a smart data visualization (‘neural recording’). An overall average variability of 1.75% between the human graders and the algorithm was found, slightly minor to 2.02% among human graders. The ambiguity in ground truth had noteworthy impact on machine learning results, which could be visualized. The convolutional neural network balanced between graders and allowed for modifiable predictions dependent on the compartment. Using the proposed T-REX setup, machine learning processes could be rendered more transparent and understandable, possibly leading to optimized applications.
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spelling pubmed-78649982021-02-16 Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence Maloca, Peter M. Müller, Philipp L. Lee, Aaron Y. Tufail, Adnan Balaskas, Konstantinos Niklaus, Stephanie Kaiser, Pascal Suter, Susanne Zarranz-Ventura, Javier Egan, Catherine Scholl, Hendrik P. N. Schnitzer, Tobias K. Singer, Thomas Hasler, Pascal W. Denk, Nora Commun Biol Article Machine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance Explainability (T-REX) technique. The proposed application was based on three components: ground truth generation by multiple graders, calculation of Hamming distances among graders and the machine learning algorithm, as well as a smart data visualization (‘neural recording’). An overall average variability of 1.75% between the human graders and the algorithm was found, slightly minor to 2.02% among human graders. The ambiguity in ground truth had noteworthy impact on machine learning results, which could be visualized. The convolutional neural network balanced between graders and allowed for modifiable predictions dependent on the compartment. Using the proposed T-REX setup, machine learning processes could be rendered more transparent and understandable, possibly leading to optimized applications. Nature Publishing Group UK 2021-02-05 /pmc/articles/PMC7864998/ /pubmed/33547415 http://dx.doi.org/10.1038/s42003-021-01697-y Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Maloca, Peter M.
Müller, Philipp L.
Lee, Aaron Y.
Tufail, Adnan
Balaskas, Konstantinos
Niklaus, Stephanie
Kaiser, Pascal
Suter, Susanne
Zarranz-Ventura, Javier
Egan, Catherine
Scholl, Hendrik P. N.
Schnitzer, Tobias K.
Singer, Thomas
Hasler, Pascal W.
Denk, Nora
Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title_full Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title_fullStr Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title_full_unstemmed Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title_short Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
title_sort unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7864998/
https://www.ncbi.nlm.nih.gov/pubmed/33547415
http://dx.doi.org/10.1038/s42003-021-01697-y
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