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Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals
Energy–structure–function (ESF) maps can aid the targeted discovery of porous molecular crystals by predicting the stable crystalline arrangements along with their functions of interest. Here, we compute ESF maps for a series of rigid molecules that comprise either a triptycene or a spiro-biphenyl c...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7865007/ https://www.ncbi.nlm.nih.gov/pubmed/33547307 http://dx.doi.org/10.1038/s41467-021-21091-w |
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author | Zhao, Chengxi Chen, Linjiang Che, Yu Pang, Zhongfu Wu, Xiaofeng Lu, Yunxiang Liu, Honglai Day, Graeme M. Cooper, Andrew I. |
author_facet | Zhao, Chengxi Chen, Linjiang Che, Yu Pang, Zhongfu Wu, Xiaofeng Lu, Yunxiang Liu, Honglai Day, Graeme M. Cooper, Andrew I. |
author_sort | Zhao, Chengxi |
collection | PubMed |
description | Energy–structure–function (ESF) maps can aid the targeted discovery of porous molecular crystals by predicting the stable crystalline arrangements along with their functions of interest. Here, we compute ESF maps for a series of rigid molecules that comprise either a triptycene or a spiro-biphenyl core, functionalized with six different hydrogen-bonding moieties. We show that the positioning of the hydrogen-bonding sites, as well as their number, has a profound influence on the shape of the resulting ESF maps, revealing promising structure–function spaces for future experiments. We also demonstrate a simple and general approach to representing and inspecting the high-dimensional data of an ESF map, enabling an efficient navigation of the ESF data to identify ‘landmark’ structures that are energetically favourable or functionally interesting. This is a step toward the automated analysis of ESF maps, an important goal for closed-loop, autonomous searches for molecular crystals with useful functions. |
format | Online Article Text |
id | pubmed-7865007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78650072021-02-16 Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals Zhao, Chengxi Chen, Linjiang Che, Yu Pang, Zhongfu Wu, Xiaofeng Lu, Yunxiang Liu, Honglai Day, Graeme M. Cooper, Andrew I. Nat Commun Article Energy–structure–function (ESF) maps can aid the targeted discovery of porous molecular crystals by predicting the stable crystalline arrangements along with their functions of interest. Here, we compute ESF maps for a series of rigid molecules that comprise either a triptycene or a spiro-biphenyl core, functionalized with six different hydrogen-bonding moieties. We show that the positioning of the hydrogen-bonding sites, as well as their number, has a profound influence on the shape of the resulting ESF maps, revealing promising structure–function spaces for future experiments. We also demonstrate a simple and general approach to representing and inspecting the high-dimensional data of an ESF map, enabling an efficient navigation of the ESF data to identify ‘landmark’ structures that are energetically favourable or functionally interesting. This is a step toward the automated analysis of ESF maps, an important goal for closed-loop, autonomous searches for molecular crystals with useful functions. Nature Publishing Group UK 2021-02-05 /pmc/articles/PMC7865007/ /pubmed/33547307 http://dx.doi.org/10.1038/s41467-021-21091-w Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Zhao, Chengxi Chen, Linjiang Che, Yu Pang, Zhongfu Wu, Xiaofeng Lu, Yunxiang Liu, Honglai Day, Graeme M. Cooper, Andrew I. Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title | Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title_full | Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title_fullStr | Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title_full_unstemmed | Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title_short | Digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
title_sort | digital navigation of energy–structure–function maps for hydrogen-bonded porous molecular crystals |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7865007/ https://www.ncbi.nlm.nih.gov/pubmed/33547307 http://dx.doi.org/10.1038/s41467-021-21091-w |
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