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Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials

Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these...

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Autores principales: Yamada, Shunji, Chikayama, Eisuke, Kikuchi, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7865946/
https://www.ncbi.nlm.nih.gov/pubmed/33499371
http://dx.doi.org/10.3390/ijms22031086
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author Yamada, Shunji
Chikayama, Eisuke
Kikuchi, Jun
author_facet Yamada, Shunji
Chikayama, Eisuke
Kikuchi, Jun
author_sort Yamada, Shunji
collection PubMed
description Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as Euglena gracilis. During cellulose degradation, (13)C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO(2). Using these methods, the (1)H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design.
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spelling pubmed-78659462021-02-07 Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials Yamada, Shunji Chikayama, Eisuke Kikuchi, Jun Int J Mol Sci Article Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as Euglena gracilis. During cellulose degradation, (13)C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO(2). Using these methods, the (1)H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design. MDPI 2021-01-22 /pmc/articles/PMC7865946/ /pubmed/33499371 http://dx.doi.org/10.3390/ijms22031086 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yamada, Shunji
Chikayama, Eisuke
Kikuchi, Jun
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_full Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_fullStr Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_full_unstemmed Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_short Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_sort signal deconvolution and generative topographic mapping regression for solid-state nmr of multi-component materials
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7865946/
https://www.ncbi.nlm.nih.gov/pubmed/33499371
http://dx.doi.org/10.3390/ijms22031086
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