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Identification of S1PR3 gene signature involved in survival of sepsis patients
BACKGROUND: Sepsis is a life-threatening complication of infection that rapidly triggers tissue damage in multiple organ systems and leads to multi-organ deterioration. Up to date, prognostic biomarkers still have limitations in predicting the survival of patients with sepsis. We need to discover mo...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866676/ https://www.ncbi.nlm.nih.gov/pubmed/33549110 http://dx.doi.org/10.1186/s12920-021-00886-2 |
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author | Feng, Anlin Ma, Wenli Faraj, Reem Kelly, Gabriel T. Black, Stephen M. Fallon, Michael B. Wang, Ting |
author_facet | Feng, Anlin Ma, Wenli Faraj, Reem Kelly, Gabriel T. Black, Stephen M. Fallon, Michael B. Wang, Ting |
author_sort | Feng, Anlin |
collection | PubMed |
description | BACKGROUND: Sepsis is a life-threatening complication of infection that rapidly triggers tissue damage in multiple organ systems and leads to multi-organ deterioration. Up to date, prognostic biomarkers still have limitations in predicting the survival of patients with sepsis. We need to discover more prognostic biomarkers to improve the sensitivity and specificity of the prognosis of sepsis patients. Sphingosine-1-phosphate (S1P) receptor 3 (S1PR3), as one of the S1P receptors, is a prospective prognostic biomarker regulating sepsis-relevant events, including compromised vascular integrity, antigen presentation, and cytokine secretion. Until now, no S1PR3-related prognostic gene signatures for sepsis patients have been found. METHODS: This study intends to obtain an S1PR3-associated gene signature from whole blood samples to be utilized as a probable prognostic tool for patients with sepsis. RESULTS: We obtained an 18-gene S1PR3-related molecular signature (S3MS) from the intersection of S1PR3-associated genes and survival-associated genes. Numerous important immunity pathways that regulate the progression of sepsis are enriched among our 18 genes. Significantly, S3MS functions greatly in both the discovery and validation cohort. Furthermore, we demonstrated that S3MS obtains significantly better classification performance than random 18-gene signatures. CONCLUSIONS: Our results confirm the key role of S1PR3-associated genes in the development of sepsis, which will be a potential prognostic biomarker for patients with sepsis. Our results also focus on the classification performance of our S3MS as biomarkers for sepsis, which could also provide an early warning system for patients with sepsis. |
format | Online Article Text |
id | pubmed-7866676 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-78666762021-02-08 Identification of S1PR3 gene signature involved in survival of sepsis patients Feng, Anlin Ma, Wenli Faraj, Reem Kelly, Gabriel T. Black, Stephen M. Fallon, Michael B. Wang, Ting BMC Med Genomics Research Article BACKGROUND: Sepsis is a life-threatening complication of infection that rapidly triggers tissue damage in multiple organ systems and leads to multi-organ deterioration. Up to date, prognostic biomarkers still have limitations in predicting the survival of patients with sepsis. We need to discover more prognostic biomarkers to improve the sensitivity and specificity of the prognosis of sepsis patients. Sphingosine-1-phosphate (S1P) receptor 3 (S1PR3), as one of the S1P receptors, is a prospective prognostic biomarker regulating sepsis-relevant events, including compromised vascular integrity, antigen presentation, and cytokine secretion. Until now, no S1PR3-related prognostic gene signatures for sepsis patients have been found. METHODS: This study intends to obtain an S1PR3-associated gene signature from whole blood samples to be utilized as a probable prognostic tool for patients with sepsis. RESULTS: We obtained an 18-gene S1PR3-related molecular signature (S3MS) from the intersection of S1PR3-associated genes and survival-associated genes. Numerous important immunity pathways that regulate the progression of sepsis are enriched among our 18 genes. Significantly, S3MS functions greatly in both the discovery and validation cohort. Furthermore, we demonstrated that S3MS obtains significantly better classification performance than random 18-gene signatures. CONCLUSIONS: Our results confirm the key role of S1PR3-associated genes in the development of sepsis, which will be a potential prognostic biomarker for patients with sepsis. Our results also focus on the classification performance of our S3MS as biomarkers for sepsis, which could also provide an early warning system for patients with sepsis. BioMed Central 2021-02-06 /pmc/articles/PMC7866676/ /pubmed/33549110 http://dx.doi.org/10.1186/s12920-021-00886-2 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Feng, Anlin Ma, Wenli Faraj, Reem Kelly, Gabriel T. Black, Stephen M. Fallon, Michael B. Wang, Ting Identification of S1PR3 gene signature involved in survival of sepsis patients |
title | Identification of S1PR3 gene signature involved in survival of sepsis patients |
title_full | Identification of S1PR3 gene signature involved in survival of sepsis patients |
title_fullStr | Identification of S1PR3 gene signature involved in survival of sepsis patients |
title_full_unstemmed | Identification of S1PR3 gene signature involved in survival of sepsis patients |
title_short | Identification of S1PR3 gene signature involved in survival of sepsis patients |
title_sort | identification of s1pr3 gene signature involved in survival of sepsis patients |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866676/ https://www.ncbi.nlm.nih.gov/pubmed/33549110 http://dx.doi.org/10.1186/s12920-021-00886-2 |
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