Cargando…
Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866884/ https://www.ncbi.nlm.nih.gov/pubmed/33584016 http://dx.doi.org/10.1016/j.knosys.2021.106849 |
_version_ | 1783648177043275776 |
---|---|
author | Li, Chun Yang, Yunyun Liang, Hui Wu, Boying |
author_facet | Li, Chun Yang, Yunyun Liang, Hui Wu, Boying |
author_sort | Li, Chun |
collection | PubMed |
description | The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based classification technique has been tried to use the identification of COVID-19 with CT imaging by hospitals, which aims to minimize the possibility of virus transmission and alleviate the burden of clinicians and radiologists. Early diagnosis of COVID-19, which not only prevents the disease from spreading further but allows more reasonable allocation of limited medical resources. Therefore, CT images play an essential role in identifying cases of COVID-19 that are in great need of intensive clinical care. Unfortunately, the current public health emergency, which has caused great difficulties in collecting a large set of precise data for training neural networks. To tackle this challenge, our first thought is transfer learning, which is a technique that aims to transfer the knowledge from one or more source tasks to a target task when the latter has fewer training data. Since the training data is relatively limited, so a transfer learning-based DensNet-121 approach for the identification of COVID-19 is established. The proposed method is inspired by the precious work of predecessors such as CheXNet for identifying common Pneumonia, which was trained using the large Chest X-ray14 dataset, and the dataset contains 112,120 frontal chest X-rays of 14 different chest diseases (including Pneumonia) that are individually labeled and achieved good performance. Therefore, CheXNet as the pre-trained network was used for the target task (COVID-19 classification) by fine-tuning the network weights on the small-sized dataset in the target task. Finally, we evaluated our proposed method on the COVID-19-CT dataset. Experimentally, our method achieves state-of-the-art performance for the accuracy (ACC) and F1-score. The quantitative indicators show that the proposed method only uses a GPU can reach the best performance, up to 0.87 and 0.86, respectively, compared with some widely used and recent deep learning methods, which are helpful for COVID-19 diagnosis and patient triage. The codes used in this manuscript are publicly available on GitHub at (https://github.com/lichun0503/CT-Classification). |
format | Online Article Text |
id | pubmed-7866884 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78668842021-02-09 Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] Li, Chun Yang, Yunyun Liang, Hui Wu, Boying Knowl Based Syst Article The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based classification technique has been tried to use the identification of COVID-19 with CT imaging by hospitals, which aims to minimize the possibility of virus transmission and alleviate the burden of clinicians and radiologists. Early diagnosis of COVID-19, which not only prevents the disease from spreading further but allows more reasonable allocation of limited medical resources. Therefore, CT images play an essential role in identifying cases of COVID-19 that are in great need of intensive clinical care. Unfortunately, the current public health emergency, which has caused great difficulties in collecting a large set of precise data for training neural networks. To tackle this challenge, our first thought is transfer learning, which is a technique that aims to transfer the knowledge from one or more source tasks to a target task when the latter has fewer training data. Since the training data is relatively limited, so a transfer learning-based DensNet-121 approach for the identification of COVID-19 is established. The proposed method is inspired by the precious work of predecessors such as CheXNet for identifying common Pneumonia, which was trained using the large Chest X-ray14 dataset, and the dataset contains 112,120 frontal chest X-rays of 14 different chest diseases (including Pneumonia) that are individually labeled and achieved good performance. Therefore, CheXNet as the pre-trained network was used for the target task (COVID-19 classification) by fine-tuning the network weights on the small-sized dataset in the target task. Finally, we evaluated our proposed method on the COVID-19-CT dataset. Experimentally, our method achieves state-of-the-art performance for the accuracy (ACC) and F1-score. The quantitative indicators show that the proposed method only uses a GPU can reach the best performance, up to 0.87 and 0.86, respectively, compared with some widely used and recent deep learning methods, which are helpful for COVID-19 diagnosis and patient triage. The codes used in this manuscript are publicly available on GitHub at (https://github.com/lichun0503/CT-Classification). Elsevier B.V. 2021-04-22 2021-02-06 /pmc/articles/PMC7866884/ /pubmed/33584016 http://dx.doi.org/10.1016/j.knosys.2021.106849 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Li, Chun Yang, Yunyun Liang, Hui Wu, Boying Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title | Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title_full | Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title_fullStr | Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title_full_unstemmed | Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title_short | Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] |
title_sort | transfer learning for establishment of recognition of covid-19 on ct imaging using small-sized training datasets [image: see text] |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866884/ https://www.ncbi.nlm.nih.gov/pubmed/33584016 http://dx.doi.org/10.1016/j.knosys.2021.106849 |
work_keys_str_mv | AT lichun transferlearningforestablishmentofrecognitionofcovid19onctimagingusingsmallsizedtrainingdatasetsimageseetext AT yangyunyun transferlearningforestablishmentofrecognitionofcovid19onctimagingusingsmallsizedtrainingdatasetsimageseetext AT lianghui transferlearningforestablishmentofrecognitionofcovid19onctimagingusingsmallsizedtrainingdatasetsimageseetext AT wuboying transferlearningforestablishmentofrecognitionofcovid19onctimagingusingsmallsizedtrainingdatasetsimageseetext |