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Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]

The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based...

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Detalles Bibliográficos
Autores principales: Li, Chun, Yang, Yunyun, Liang, Hui, Wu, Boying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866884/
https://www.ncbi.nlm.nih.gov/pubmed/33584016
http://dx.doi.org/10.1016/j.knosys.2021.106849
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author Li, Chun
Yang, Yunyun
Liang, Hui
Wu, Boying
author_facet Li, Chun
Yang, Yunyun
Liang, Hui
Wu, Boying
author_sort Li, Chun
collection PubMed
description The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based classification technique has been tried to use the identification of COVID-19 with CT imaging by hospitals, which aims to minimize the possibility of virus transmission and alleviate the burden of clinicians and radiologists. Early diagnosis of COVID-19, which not only prevents the disease from spreading further but allows more reasonable allocation of limited medical resources. Therefore, CT images play an essential role in identifying cases of COVID-19 that are in great need of intensive clinical care. Unfortunately, the current public health emergency, which has caused great difficulties in collecting a large set of precise data for training neural networks. To tackle this challenge, our first thought is transfer learning, which is a technique that aims to transfer the knowledge from one or more source tasks to a target task when the latter has fewer training data. Since the training data is relatively limited, so a transfer learning-based DensNet-121 approach for the identification of COVID-19 is established. The proposed method is inspired by the precious work of predecessors such as CheXNet for identifying common Pneumonia, which was trained using the large Chest X-ray14 dataset, and the dataset contains 112,120 frontal chest X-rays of 14 different chest diseases (including Pneumonia) that are individually labeled and achieved good performance. Therefore, CheXNet as the pre-trained network was used for the target task (COVID-19 classification) by fine-tuning the network weights on the small-sized dataset in the target task. Finally, we evaluated our proposed method on the COVID-19-CT dataset. Experimentally, our method achieves state-of-the-art performance for the accuracy (ACC) and F1-score. The quantitative indicators show that the proposed method only uses a GPU can reach the best performance, up to 0.87 and 0.86, respectively, compared with some widely used and recent deep learning methods, which are helpful for COVID-19 diagnosis and patient triage. The codes used in this manuscript are publicly available on GitHub at (https://github.com/lichun0503/CT-Classification).
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spelling pubmed-78668842021-02-09 Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text] Li, Chun Yang, Yunyun Liang, Hui Wu, Boying Knowl Based Syst Article The coronavirus disease, called COVID-19, which is spreading fast worldwide since the end of 2019, and has become a global challenging pandemic. Until 27th May 2020, it caused more than 5.6 million individuals infected throughout the world and resulted in greater than 348,145 deaths. CT images-based classification technique has been tried to use the identification of COVID-19 with CT imaging by hospitals, which aims to minimize the possibility of virus transmission and alleviate the burden of clinicians and radiologists. Early diagnosis of COVID-19, which not only prevents the disease from spreading further but allows more reasonable allocation of limited medical resources. Therefore, CT images play an essential role in identifying cases of COVID-19 that are in great need of intensive clinical care. Unfortunately, the current public health emergency, which has caused great difficulties in collecting a large set of precise data for training neural networks. To tackle this challenge, our first thought is transfer learning, which is a technique that aims to transfer the knowledge from one or more source tasks to a target task when the latter has fewer training data. Since the training data is relatively limited, so a transfer learning-based DensNet-121 approach for the identification of COVID-19 is established. The proposed method is inspired by the precious work of predecessors such as CheXNet for identifying common Pneumonia, which was trained using the large Chest X-ray14 dataset, and the dataset contains 112,120 frontal chest X-rays of 14 different chest diseases (including Pneumonia) that are individually labeled and achieved good performance. Therefore, CheXNet as the pre-trained network was used for the target task (COVID-19 classification) by fine-tuning the network weights on the small-sized dataset in the target task. Finally, we evaluated our proposed method on the COVID-19-CT dataset. Experimentally, our method achieves state-of-the-art performance for the accuracy (ACC) and F1-score. The quantitative indicators show that the proposed method only uses a GPU can reach the best performance, up to 0.87 and 0.86, respectively, compared with some widely used and recent deep learning methods, which are helpful for COVID-19 diagnosis and patient triage. The codes used in this manuscript are publicly available on GitHub at (https://github.com/lichun0503/CT-Classification). Elsevier B.V. 2021-04-22 2021-02-06 /pmc/articles/PMC7866884/ /pubmed/33584016 http://dx.doi.org/10.1016/j.knosys.2021.106849 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Li, Chun
Yang, Yunyun
Liang, Hui
Wu, Boying
Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title_full Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title_fullStr Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title_full_unstemmed Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title_short Transfer learning for establishment of recognition of COVID-19 on CT imaging using small-sized training datasets [Image: see text]
title_sort transfer learning for establishment of recognition of covid-19 on ct imaging using small-sized training datasets [image: see text]
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866884/
https://www.ncbi.nlm.nih.gov/pubmed/33584016
http://dx.doi.org/10.1016/j.knosys.2021.106849
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