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Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer

AIMS: Identification of miRNA signature to predict the prognosis of gastric cancer (GC) patients by integrating bioinformatics and experimental validation. METHODS: The miRNA expression profile and clinical data of GC were collected. The univariable and LASSO-Cox regression were used to construct th...

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Detalles Bibliográficos
Autores principales: Qi, Wenqian, Zhang, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866890/
https://www.ncbi.nlm.nih.gov/pubmed/33604158
http://dx.doi.org/10.7717/peerj.10462
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author Qi, Wenqian
Zhang, Qian
author_facet Qi, Wenqian
Zhang, Qian
author_sort Qi, Wenqian
collection PubMed
description AIMS: Identification of miRNA signature to predict the prognosis of gastric cancer (GC) patients by integrating bioinformatics and experimental validation. METHODS: The miRNA expression profile and clinical data of GC were collected. The univariable and LASSO-Cox regression were used to construct the risk signature. The receiver operating characteristic (ROC) curve analysis confirmed the good performance of the prognostic model. RESULTS: A 3-miRNA prognostic signature was constructed, which included hsa-miR-126-3p, hsa-miR-143-5p, and hsa-miR-1275. A nomogram, including the prognostic signature to predict the overall survival, was established, and internal validation in the The Cancer Genome Atlas (TCGA) cohort was performed. We found that compared with the traditional pathological stage, the nomogram was the best at predicting the prognosis. CONCLUSIONS: The predictive model and the nomogram will enable patients with GC to be more accurately managed in clinical practice.
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spelling pubmed-78668902021-02-17 Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer Qi, Wenqian Zhang, Qian PeerJ Bioinformatics AIMS: Identification of miRNA signature to predict the prognosis of gastric cancer (GC) patients by integrating bioinformatics and experimental validation. METHODS: The miRNA expression profile and clinical data of GC were collected. The univariable and LASSO-Cox regression were used to construct the risk signature. The receiver operating characteristic (ROC) curve analysis confirmed the good performance of the prognostic model. RESULTS: A 3-miRNA prognostic signature was constructed, which included hsa-miR-126-3p, hsa-miR-143-5p, and hsa-miR-1275. A nomogram, including the prognostic signature to predict the overall survival, was established, and internal validation in the The Cancer Genome Atlas (TCGA) cohort was performed. We found that compared with the traditional pathological stage, the nomogram was the best at predicting the prognosis. CONCLUSIONS: The predictive model and the nomogram will enable patients with GC to be more accurately managed in clinical practice. PeerJ Inc. 2021-02-03 /pmc/articles/PMC7866890/ /pubmed/33604158 http://dx.doi.org/10.7717/peerj.10462 Text en ©2021 Qi and Zhang https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Qi, Wenqian
Zhang, Qian
Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title_full Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title_fullStr Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title_full_unstemmed Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title_short Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
title_sort development and clinical validation of a 3-mirna signature to predict prognosis of gastric cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7866890/
https://www.ncbi.nlm.nih.gov/pubmed/33604158
http://dx.doi.org/10.7717/peerj.10462
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