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Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation
Coronary artery disease (CAD) and atrial fibrillation (AF) share common risk factors, such as hypertension and diabetes. The patients with CAD often suffer concomitantly AF, but how two diseases interact with each other at cellular and molecular levels remain largely unknown. The present study aims...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Leibniz Research Centre for Working Environment and Human Factors
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7868642/ https://www.ncbi.nlm.nih.gov/pubmed/33564282 http://dx.doi.org/10.17179/excli2020-3262 |
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author | Zheng, Youjing He, Jia-Qiang |
author_facet | Zheng, Youjing He, Jia-Qiang |
author_sort | Zheng, Youjing |
collection | PubMed |
description | Coronary artery disease (CAD) and atrial fibrillation (AF) share common risk factors, such as hypertension and diabetes. The patients with CAD often suffer concomitantly AF, but how two diseases interact with each other at cellular and molecular levels remain largely unknown. The present study aims to dissect the common differentially expressed genes (DEGs) that are concurrently associated with CAD and AF. Two datasets [GSE71226 for CAD) and GSE31821 for AF] were analyzed with GEO2R and Venn Diagram to identify the DEGs. Signaling pathways, gene enrichments, and protein-protein interactions (PPI) of the identified common DEGs were further analyzed with Kyoto Encyclopedia of Gene and Genome (KEGG), Database for Annotation, Visualization and Integrated Discovery (DAVID), and Search Toll for the Retrieval of Interacting Genes (STRING). 565 up- and 1367 down-regulated genes in GSE71226 and 293 up- and 68 down-regulated genes in GSE31821 were identified. Among those, 21 common DEGs were discovered from both datasets, which lead to the findings of 4 CAD and 21 AF pathways, 3 significant gene enrichments (intracellular cytoplasm, protein binding, and vascular labyrinthine layer), and 3 key proteins (membrane metallo-endopeptidase (MME), transferrin receptor 1 (TfR1), and Lysosome-associated membrane glycoprotein 1 (LAMP1)). Together, these data implied that these three proteins may play a central role in development of both CAD and AF. |
format | Online Article Text |
id | pubmed-7868642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Leibniz Research Centre for Working Environment and Human Factors |
record_format | MEDLINE/PubMed |
spelling | pubmed-78686422021-02-08 Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation Zheng, Youjing He, Jia-Qiang EXCLI J Original Article Coronary artery disease (CAD) and atrial fibrillation (AF) share common risk factors, such as hypertension and diabetes. The patients with CAD often suffer concomitantly AF, but how two diseases interact with each other at cellular and molecular levels remain largely unknown. The present study aims to dissect the common differentially expressed genes (DEGs) that are concurrently associated with CAD and AF. Two datasets [GSE71226 for CAD) and GSE31821 for AF] were analyzed with GEO2R and Venn Diagram to identify the DEGs. Signaling pathways, gene enrichments, and protein-protein interactions (PPI) of the identified common DEGs were further analyzed with Kyoto Encyclopedia of Gene and Genome (KEGG), Database for Annotation, Visualization and Integrated Discovery (DAVID), and Search Toll for the Retrieval of Interacting Genes (STRING). 565 up- and 1367 down-regulated genes in GSE71226 and 293 up- and 68 down-regulated genes in GSE31821 were identified. Among those, 21 common DEGs were discovered from both datasets, which lead to the findings of 4 CAD and 21 AF pathways, 3 significant gene enrichments (intracellular cytoplasm, protein binding, and vascular labyrinthine layer), and 3 key proteins (membrane metallo-endopeptidase (MME), transferrin receptor 1 (TfR1), and Lysosome-associated membrane glycoprotein 1 (LAMP1)). Together, these data implied that these three proteins may play a central role in development of both CAD and AF. Leibniz Research Centre for Working Environment and Human Factors 2021-01-18 /pmc/articles/PMC7868642/ /pubmed/33564282 http://dx.doi.org/10.17179/excli2020-3262 Text en Copyright © 2021 Zheng et al. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (http://creativecommons.org/licenses/by/4.0/) You are free to copy, distribute and transmit the work, provided the original author and source are credited. |
spellingShingle | Original Article Zheng, Youjing He, Jia-Qiang Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title | Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title_full | Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title_fullStr | Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title_full_unstemmed | Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title_short | Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
title_sort | common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7868642/ https://www.ncbi.nlm.nih.gov/pubmed/33564282 http://dx.doi.org/10.17179/excli2020-3262 |
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