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iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features

DNA replication is one of the specific processes to be considered in all the living organisms, specifically eukaryotes. The prevalence of DNA replication is significant for an evolutionary transition at the beginning of life. DNA replication proteins are those proteins which support the process of r...

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Autores principales: Amin, Arqam, Awais, Muhammad, Sahai, Shalini, Hussain, Waqar, Rasool, Nouman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7869428/
https://www.ncbi.nlm.nih.gov/pubmed/33584161
http://dx.doi.org/10.1007/s10989-021-10170-7
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author Amin, Arqam
Awais, Muhammad
Sahai, Shalini
Hussain, Waqar
Rasool, Nouman
author_facet Amin, Arqam
Awais, Muhammad
Sahai, Shalini
Hussain, Waqar
Rasool, Nouman
author_sort Amin, Arqam
collection PubMed
description DNA replication is one of the specific processes to be considered in all the living organisms, specifically eukaryotes. The prevalence of DNA replication is significant for an evolutionary transition at the beginning of life. DNA replication proteins are those proteins which support the process of replication and are also reported to be important in drug design and discovery. This information depicts that DNA replication proteins have a very important role in human bodies, however, to study their mechanism, their identification is necessary. Thus, it is a very important task but, in any case, an experimental identification is time-consuming, highly-costly and laborious. To cope with this issue, a computational methodology is required for prediction of these proteins, however, no prior method exists. This study comprehends the construction of novel prediction model to serve the proposed purpose. The prediction model is developed based on the artificial neural network by integrating the position relative features and sequence statistical moments in PseAAC for training neural networks. Highest overall accuracy has been achieved through tenfold cross-validation and Jackknife testing that was computed to be 96.22% and 98.56%, respectively. Our astonishing experimental results demonstrated that the proposed predictor surpass the existing models that can be served as a time and cost-effective stratagem for designing novel drugs to strike the contemporary bacterial infection.
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spelling pubmed-78694282021-02-09 iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features Amin, Arqam Awais, Muhammad Sahai, Shalini Hussain, Waqar Rasool, Nouman Int J Pept Res Ther Article DNA replication is one of the specific processes to be considered in all the living organisms, specifically eukaryotes. The prevalence of DNA replication is significant for an evolutionary transition at the beginning of life. DNA replication proteins are those proteins which support the process of replication and are also reported to be important in drug design and discovery. This information depicts that DNA replication proteins have a very important role in human bodies, however, to study their mechanism, their identification is necessary. Thus, it is a very important task but, in any case, an experimental identification is time-consuming, highly-costly and laborious. To cope with this issue, a computational methodology is required for prediction of these proteins, however, no prior method exists. This study comprehends the construction of novel prediction model to serve the proposed purpose. The prediction model is developed based on the artificial neural network by integrating the position relative features and sequence statistical moments in PseAAC for training neural networks. Highest overall accuracy has been achieved through tenfold cross-validation and Jackknife testing that was computed to be 96.22% and 98.56%, respectively. Our astonishing experimental results demonstrated that the proposed predictor surpass the existing models that can be served as a time and cost-effective stratagem for designing novel drugs to strike the contemporary bacterial infection. Springer Netherlands 2021-02-08 2021 /pmc/articles/PMC7869428/ /pubmed/33584161 http://dx.doi.org/10.1007/s10989-021-10170-7 Text en © The Author(s), under exclusive licence to Springer Nature B.V. part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Amin, Arqam
Awais, Muhammad
Sahai, Shalini
Hussain, Waqar
Rasool, Nouman
iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title_full iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title_fullStr iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title_full_unstemmed iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title_short iDRP-PseAAC: Identification of DNA Replication Proteins Using General PseAAC and Position Dependent Features
title_sort idrp-pseaac: identification of dna replication proteins using general pseaac and position dependent features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7869428/
https://www.ncbi.nlm.nih.gov/pubmed/33584161
http://dx.doi.org/10.1007/s10989-021-10170-7
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