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COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet

BACKGROUND: Currently, there is an urgent need for efficient tools to assess the diagnosis of COVID-19 patients. In this paper, we present feasible solutions for detecting and labeling infected tissues on CT lung images of such patients. Two structurally-different deep learning techniques, SegNet an...

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Autores principales: Saood, Adnan, Hatem, Iyad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870362/
https://www.ncbi.nlm.nih.gov/pubmed/33557772
http://dx.doi.org/10.1186/s12880-020-00529-5
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author Saood, Adnan
Hatem, Iyad
author_facet Saood, Adnan
Hatem, Iyad
author_sort Saood, Adnan
collection PubMed
description BACKGROUND: Currently, there is an urgent need for efficient tools to assess the diagnosis of COVID-19 patients. In this paper, we present feasible solutions for detecting and labeling infected tissues on CT lung images of such patients. Two structurally-different deep learning techniques, SegNet and U-NET, are investigated for semantically segmenting infected tissue regions in CT lung images. METHODS: We propose to use two known deep learning networks, SegNet and U-NET, for image tissue classification. SegNet is characterized as a scene segmentation network and U-NET as a medical segmentation tool. Both networks were exploited as binary segmentors to discriminate between infected and healthy lung tissue, also as multi-class segmentors to learn the infection type on the lung. Each network is trained using seventy-two data images, validated on ten images, and tested against the left eighteen images. Several statistical scores are calculated for the results and tabulated accordingly. RESULTS: The results show the superior ability of SegNet in classifying infected/non-infected tissues compared to the other methods (with 0.95 mean accuracy), while the U-NET shows better results as a multi-class segmentor (with 0.91 mean accuracy). CONCLUSION: Semantically segmenting CT scan images of COVID-19 patients is a crucial goal because it would not only assist in disease diagnosis, also help in quantifying the severity of the illness, and hence, prioritize the population treatment accordingly. We propose computer-based techniques that prove to be reliable as detectors for infected tissue in lung CT scans. The availability of such a method in today’s pandemic would help automate, prioritize, fasten, and broaden the treatment of COVID-19 patients globally.
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spelling pubmed-78703622021-02-09 COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet Saood, Adnan Hatem, Iyad BMC Med Imaging Technical Advance BACKGROUND: Currently, there is an urgent need for efficient tools to assess the diagnosis of COVID-19 patients. In this paper, we present feasible solutions for detecting and labeling infected tissues on CT lung images of such patients. Two structurally-different deep learning techniques, SegNet and U-NET, are investigated for semantically segmenting infected tissue regions in CT lung images. METHODS: We propose to use two known deep learning networks, SegNet and U-NET, for image tissue classification. SegNet is characterized as a scene segmentation network and U-NET as a medical segmentation tool. Both networks were exploited as binary segmentors to discriminate between infected and healthy lung tissue, also as multi-class segmentors to learn the infection type on the lung. Each network is trained using seventy-two data images, validated on ten images, and tested against the left eighteen images. Several statistical scores are calculated for the results and tabulated accordingly. RESULTS: The results show the superior ability of SegNet in classifying infected/non-infected tissues compared to the other methods (with 0.95 mean accuracy), while the U-NET shows better results as a multi-class segmentor (with 0.91 mean accuracy). CONCLUSION: Semantically segmenting CT scan images of COVID-19 patients is a crucial goal because it would not only assist in disease diagnosis, also help in quantifying the severity of the illness, and hence, prioritize the population treatment accordingly. We propose computer-based techniques that prove to be reliable as detectors for infected tissue in lung CT scans. The availability of such a method in today’s pandemic would help automate, prioritize, fasten, and broaden the treatment of COVID-19 patients globally. BioMed Central 2021-02-09 /pmc/articles/PMC7870362/ /pubmed/33557772 http://dx.doi.org/10.1186/s12880-020-00529-5 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Technical Advance
Saood, Adnan
Hatem, Iyad
COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title_full COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title_fullStr COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title_full_unstemmed COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title_short COVID-19 lung CT image segmentation using deep learning methods: U-Net versus SegNet
title_sort covid-19 lung ct image segmentation using deep learning methods: u-net versus segnet
topic Technical Advance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870362/
https://www.ncbi.nlm.nih.gov/pubmed/33557772
http://dx.doi.org/10.1186/s12880-020-00529-5
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