Cargando…

Editorial: Genomic Colocalization and Enrichment Analyses

Detalles Bibliográficos
Autores principales:	Kanduri, Chakravarthi, Sandve, Geir Kjetil, Hovig, Eivind, De, Subhajyoti, Layer, Ryan M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870795/ https://www.ncbi.nlm.nih.gov/pubmed/33574832 http://dx.doi.org/10.3389/fgene.2020.617876

Ejemplares similares

Colocalization analyses of genomic elements: approaches, recommendations and challenges
por: Kanduri, Chakravarthi, et al.
Publicado: (2019)

Genome build information is an essential part of genomic track files
por: Kanduri, Chakravarthi, et al.
Publicado: (2017)

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
por: Simovski, Boris, et al.
Publicado: (2018)

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis
por: Domanska, Diana, et al.
Publicado: (2018)

Ten Simple Rules for Reproducible Computational Research
por: Sandve, Geir Kjetil, et al.
Publicado: (2013)

Identifying elemental genomic track types and representing them uniformly
por: Gundersen, Sveinung, et al.
Publicado: (2011)

ClusTrack: Feature Extraction and Similarity Measures for Clustering of Genome-Wide Data Sets
por: Rydbeck, Halfdan, et al.
Publicado: (2015)

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
por: Paulsen, Jonas, et al.
Publicado: (2014)

Transcriptionally Active Regions Are the Preferred Targets for Chromosomal HPV Integration in Cervical Carcinogenesis
por: Christiansen, Irene Kraus, et al.
Publicado: (2015)

Galaxy Portal: interacting with the galaxy platform through mobile devices
por: Børnich, Claus, et al.
Publicado: (2016)

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements
por: Paulsen, Jonas, et al.
Publicado: (2013)

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules
por: Ronzio, Mirko, et al.
Publicado: (2020)

The rainfall plot: its motivation, characteristics and pitfalls
por: Domanska, Diana, et al.
Publicado: (2017)

epiCOLOC: Integrating Large-Scale and Context-Dependent Epigenomics Features for Comprehensive Colocalization Analysis
por: Zhou, Yao, et al.
Publicado: (2020)

hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks
por: Kalyanasundaram, Sumana, et al.
Publicado: (2023)

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes
por: Bengtsen, Mads, et al.
Publicado: (2015)

Editorial: Comparative Genomics and Functional Genomics Analyses in Plants
por: Song, Xiaoming, et al.
Publicado: (2021)

Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
por: Kanduri, Chakravarthi, et al.
Publicado: (2022)

The effect of listening to music on human transcriptome
por: Kanduri, Chakravarthi, et al.
Publicado: (2015)

Signatures Beyond Oncogenic Mutations in Cell-Free DNA Sequencing for Non-Invasive, Early Detection of Cancer
por: De, Subhajyoti
Publicado: (2021)

The Genomic HyperBrowser: inferential genomics at the sequence level
por: Sandve, Geir K, et al.
Publicado: (2010)

simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods
por: Kanduri, Chakravarthi, et al.
Publicado: (2023)

A survey of motif discovery methods in an integrated framework
por: Sandve, Geir Kjetil, et al.
Publicado: (2006)

Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking
por: Sandve, Geir Kjetil, et al.
Publicado: (2022)

Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
por: Tøstesen, Eivind, et al.
Publicado: (2005)

Editorial: Machine Learning in Genome-Wide Association Studies
por: Hu, Ting, et al.
Publicado: (2020)

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads
por: Khelik, Ksenia, et al.
Publicado: (2020)

Editorial: Microbiome genomics for livestock production
por: Andrade, Bruno G. N., et al.
Publicado: (2022)

Editorial: Otitis Media Genomics and the Middle Ear Microbiome
por: Santos-Cortez, Regie Lyn P., et al.
Publicado: (2021)

Joint Analysis of Genetic Correlation, Mendelian Randomization and Colocalization Highlights the Bi-Directional Causal Association Between Hypothyroidism and Primary Biliary Cirrhosis
por: Wang, Yanjun, et al.
Publicado: (2021)

B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2
por: du Pré, M. Fleur, et al.
Publicado: (2019)

Editorial: Reproductive genomics
por: Liu, Rong, et al.
Publicado: (2022)

Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures
por: Olstad, Emilie Willoch, et al.
Publicado: (2022)

Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization
por: Wen, Xiaoquan, et al.
Publicado: (2017)

ColoWeb: a resource for analysis of colocalization of genomic features
por: Kim, RyangGuk, et al.
Publicado: (2015)

Meta gene set enrichment analyses link miR-137-regulated pathways with schizophrenia risk
por: Wright, Carrie, et al.
Publicado: (2015)

Compo: composite motif discovery using discrete models
por: Sandve, Geir Kjetil, et al.
Publicado: (2008)

Sequential Monte Carlo multiple testing
por: Sandve, Geir Kjetil, et al.
Publicado: (2011)

Editorial: Genomics of Experimental Evolution
por: Greer, Lee F.
Publicado: (2017)

Editorial: Buffalo Genetics and Genomics
por: Abdel-Shafy, Hamdy, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_e1nt42gfaeodgnvd7d45ecgrk8