Cargando…

Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images

In this study, we propose a novel point cloud based 3D registration and segmentation framework using reinforcement learning. An artificial agent, implemented as a distinct actor based on value networks, is trained to predict the optimal piece-wise linear transformation of a point cloud for the joint...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhong, Xia, Amrehn, Mario, Ravikumar, Nishant, Chen, Shuqing, Strobel, Norbert, Birkhold, Annette, Kowarschik, Markus, Fahrig, Rebecca, Maier, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870874/
https://www.ncbi.nlm.nih.gov/pubmed/33558570
http://dx.doi.org/10.1038/s41598-021-82370-6
_version_ 1783648896725024768
author Zhong, Xia
Amrehn, Mario
Ravikumar, Nishant
Chen, Shuqing
Strobel, Norbert
Birkhold, Annette
Kowarschik, Markus
Fahrig, Rebecca
Maier, Andreas
author_facet Zhong, Xia
Amrehn, Mario
Ravikumar, Nishant
Chen, Shuqing
Strobel, Norbert
Birkhold, Annette
Kowarschik, Markus
Fahrig, Rebecca
Maier, Andreas
author_sort Zhong, Xia
collection PubMed
description In this study, we propose a novel point cloud based 3D registration and segmentation framework using reinforcement learning. An artificial agent, implemented as a distinct actor based on value networks, is trained to predict the optimal piece-wise linear transformation of a point cloud for the joint tasks of registration and segmentation. The actor network estimates a set of plausible actions and the value network aims to select the optimal action for the current observation. Point-wise features that comprise spatial positions (and surface normal vectors in the case of structured meshes), and their corresponding image features, are used to encode the observation and represent the underlying 3D volume. The actor and value networks are applied iteratively to estimate a sequence of transformations that enable accurate delineation of object boundaries. The proposed approach was extensively evaluated in both segmentation and registration tasks using a variety of challenging clinical datasets. Our method has fewer trainable parameters and lower computational complexity compared to the 3D U-Net, and it is independent of the volume resolution. We show that the proposed method is applicable to mono- and multi-modal segmentation tasks, achieving significant improvements over the state-of-the-art for the latter. The flexibility of the proposed framework is further demonstrated for a multi-modal registration application. As we learn to predict actions rather than a target, the proposed method is more robust compared to the 3D U-Net when dealing with previously unseen datasets, acquired using different protocols or modalities. As a result, the proposed method provides a promising multi-purpose segmentation and registration framework, particular in the context of image-guided interventions.
format Online
Article
Text
id pubmed-7870874
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-78708742021-02-10 Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images Zhong, Xia Amrehn, Mario Ravikumar, Nishant Chen, Shuqing Strobel, Norbert Birkhold, Annette Kowarschik, Markus Fahrig, Rebecca Maier, Andreas Sci Rep Article In this study, we propose a novel point cloud based 3D registration and segmentation framework using reinforcement learning. An artificial agent, implemented as a distinct actor based on value networks, is trained to predict the optimal piece-wise linear transformation of a point cloud for the joint tasks of registration and segmentation. The actor network estimates a set of plausible actions and the value network aims to select the optimal action for the current observation. Point-wise features that comprise spatial positions (and surface normal vectors in the case of structured meshes), and their corresponding image features, are used to encode the observation and represent the underlying 3D volume. The actor and value networks are applied iteratively to estimate a sequence of transformations that enable accurate delineation of object boundaries. The proposed approach was extensively evaluated in both segmentation and registration tasks using a variety of challenging clinical datasets. Our method has fewer trainable parameters and lower computational complexity compared to the 3D U-Net, and it is independent of the volume resolution. We show that the proposed method is applicable to mono- and multi-modal segmentation tasks, achieving significant improvements over the state-of-the-art for the latter. The flexibility of the proposed framework is further demonstrated for a multi-modal registration application. As we learn to predict actions rather than a target, the proposed method is more robust compared to the 3D U-Net when dealing with previously unseen datasets, acquired using different protocols or modalities. As a result, the proposed method provides a promising multi-purpose segmentation and registration framework, particular in the context of image-guided interventions. Nature Publishing Group UK 2021-02-08 /pmc/articles/PMC7870874/ /pubmed/33558570 http://dx.doi.org/10.1038/s41598-021-82370-6 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhong, Xia
Amrehn, Mario
Ravikumar, Nishant
Chen, Shuqing
Strobel, Norbert
Birkhold, Annette
Kowarschik, Markus
Fahrig, Rebecca
Maier, Andreas
Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title_full Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title_fullStr Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title_full_unstemmed Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title_short Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images
title_sort deep action learning enables robust 3d segmentation of body organs in various ct and mri images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870874/
https://www.ncbi.nlm.nih.gov/pubmed/33558570
http://dx.doi.org/10.1038/s41598-021-82370-6
work_keys_str_mv AT zhongxia deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT amrehnmario deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT ravikumarnishant deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT chenshuqing deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT strobelnorbert deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT birkholdannette deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT kowarschikmarkus deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT fahrigrebecca deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages
AT maierandreas deepactionlearningenablesrobust3dsegmentationofbodyorgansinvariousctandmriimages