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The singularity response reveals entrainment properties of the plant circadian clock

Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively inv...

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Autores principales: Masuda, Kosaku, Tokuda, Isao T., Nakamichi, Norihito, Fukuda, Hirokazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870946/
https://www.ncbi.nlm.nih.gov/pubmed/33558539
http://dx.doi.org/10.1038/s41467-021-21167-7
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author Masuda, Kosaku
Tokuda, Isao T.
Nakamichi, Norihito
Fukuda, Hirokazu
author_facet Masuda, Kosaku
Tokuda, Isao T.
Nakamichi, Norihito
Fukuda, Hirokazu
author_sort Masuda, Kosaku
collection PubMed
description Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature.
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spelling pubmed-78709462021-02-11 The singularity response reveals entrainment properties of the plant circadian clock Masuda, Kosaku Tokuda, Isao T. Nakamichi, Norihito Fukuda, Hirokazu Nat Commun Article Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature. Nature Publishing Group UK 2021-02-08 /pmc/articles/PMC7870946/ /pubmed/33558539 http://dx.doi.org/10.1038/s41467-021-21167-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Masuda, Kosaku
Tokuda, Isao T.
Nakamichi, Norihito
Fukuda, Hirokazu
The singularity response reveals entrainment properties of the plant circadian clock
title The singularity response reveals entrainment properties of the plant circadian clock
title_full The singularity response reveals entrainment properties of the plant circadian clock
title_fullStr The singularity response reveals entrainment properties of the plant circadian clock
title_full_unstemmed The singularity response reveals entrainment properties of the plant circadian clock
title_short The singularity response reveals entrainment properties of the plant circadian clock
title_sort singularity response reveals entrainment properties of the plant circadian clock
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870946/
https://www.ncbi.nlm.nih.gov/pubmed/33558539
http://dx.doi.org/10.1038/s41467-021-21167-7
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