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The singularity response reveals entrainment properties of the plant circadian clock
Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively inv...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870946/ https://www.ncbi.nlm.nih.gov/pubmed/33558539 http://dx.doi.org/10.1038/s41467-021-21167-7 |
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author | Masuda, Kosaku Tokuda, Isao T. Nakamichi, Norihito Fukuda, Hirokazu |
author_facet | Masuda, Kosaku Tokuda, Isao T. Nakamichi, Norihito Fukuda, Hirokazu |
author_sort | Masuda, Kosaku |
collection | PubMed |
description | Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature. |
format | Online Article Text |
id | pubmed-7870946 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78709462021-02-11 The singularity response reveals entrainment properties of the plant circadian clock Masuda, Kosaku Tokuda, Isao T. Nakamichi, Norihito Fukuda, Hirokazu Nat Commun Article Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature. Nature Publishing Group UK 2021-02-08 /pmc/articles/PMC7870946/ /pubmed/33558539 http://dx.doi.org/10.1038/s41467-021-21167-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Masuda, Kosaku Tokuda, Isao T. Nakamichi, Norihito Fukuda, Hirokazu The singularity response reveals entrainment properties of the plant circadian clock |
title | The singularity response reveals entrainment properties of the plant circadian clock |
title_full | The singularity response reveals entrainment properties of the plant circadian clock |
title_fullStr | The singularity response reveals entrainment properties of the plant circadian clock |
title_full_unstemmed | The singularity response reveals entrainment properties of the plant circadian clock |
title_short | The singularity response reveals entrainment properties of the plant circadian clock |
title_sort | singularity response reveals entrainment properties of the plant circadian clock |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7870946/ https://www.ncbi.nlm.nih.gov/pubmed/33558539 http://dx.doi.org/10.1038/s41467-021-21167-7 |
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