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Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging

[Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, an...

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Autores principales: Fdez. Galván, Ignacio, Raggi, Gerardo, Lindh, Roland
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871327/
https://www.ncbi.nlm.nih.gov/pubmed/33382621
http://dx.doi.org/10.1021/acs.jctc.0c01163
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author Fdez. Galván, Ignacio
Raggi, Gerardo
Lindh, Roland
author_facet Fdez. Galván, Ignacio
Raggi, Gerardo
Lindh, Roland
author_sort Fdez. Galván, Ignacio
collection PubMed
description [Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, and an efficient and fast estimate of hyperparameters has demonstrated performance on par or better than standard methods. In this report, we extend the approach to constrained optimizations and transition states and benchmark it for a set of reactions. We compare the performance of the newly developed method with the standard techniques in the location of transition states and in constrained optimizations, both isolated and in the context of reaction path computation. The results show that the method outperforms the current standard in efficiency as well as in robustness.
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spelling pubmed-78713272021-02-09 Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging Fdez. Galván, Ignacio Raggi, Gerardo Lindh, Roland J Chem Theory Comput [Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, and an efficient and fast estimate of hyperparameters has demonstrated performance on par or better than standard methods. In this report, we extend the approach to constrained optimizations and transition states and benchmark it for a set of reactions. We compare the performance of the newly developed method with the standard techniques in the location of transition states and in constrained optimizations, both isolated and in the context of reaction path computation. The results show that the method outperforms the current standard in efficiency as well as in robustness. American Chemical Society 2020-12-31 2021-01-12 /pmc/articles/PMC7871327/ /pubmed/33382621 http://dx.doi.org/10.1021/acs.jctc.0c01163 Text en © 2020 The Authors. Published by American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Fdez. Galván, Ignacio
Raggi, Gerardo
Lindh, Roland
Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title_full Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title_fullStr Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title_full_unstemmed Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title_short Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
title_sort restricted-variance constrained, reaction path, and transition state molecular optimizations using gradient-enhanced kriging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871327/
https://www.ncbi.nlm.nih.gov/pubmed/33382621
http://dx.doi.org/10.1021/acs.jctc.0c01163
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