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Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging
[Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, an...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871327/ https://www.ncbi.nlm.nih.gov/pubmed/33382621 http://dx.doi.org/10.1021/acs.jctc.0c01163 |
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author | Fdez. Galván, Ignacio Raggi, Gerardo Lindh, Roland |
author_facet | Fdez. Galván, Ignacio Raggi, Gerardo Lindh, Roland |
author_sort | Fdez. Galván, Ignacio |
collection | PubMed |
description | [Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, and an efficient and fast estimate of hyperparameters has demonstrated performance on par or better than standard methods. In this report, we extend the approach to constrained optimizations and transition states and benchmark it for a set of reactions. We compare the performance of the newly developed method with the standard techniques in the location of transition states and in constrained optimizations, both isolated and in the context of reaction path computation. The results show that the method outperforms the current standard in efficiency as well as in robustness. |
format | Online Article Text |
id | pubmed-7871327 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-78713272021-02-09 Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging Fdez. Galván, Ignacio Raggi, Gerardo Lindh, Roland J Chem Theory Comput [Image: see text] Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, and an efficient and fast estimate of hyperparameters has demonstrated performance on par or better than standard methods. In this report, we extend the approach to constrained optimizations and transition states and benchmark it for a set of reactions. We compare the performance of the newly developed method with the standard techniques in the location of transition states and in constrained optimizations, both isolated and in the context of reaction path computation. The results show that the method outperforms the current standard in efficiency as well as in robustness. American Chemical Society 2020-12-31 2021-01-12 /pmc/articles/PMC7871327/ /pubmed/33382621 http://dx.doi.org/10.1021/acs.jctc.0c01163 Text en © 2020 The Authors. Published by American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Fdez. Galván, Ignacio Raggi, Gerardo Lindh, Roland Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title | Restricted-Variance Constrained, Reaction Path, and
Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title_full | Restricted-Variance Constrained, Reaction Path, and
Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title_fullStr | Restricted-Variance Constrained, Reaction Path, and
Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title_full_unstemmed | Restricted-Variance Constrained, Reaction Path, and
Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title_short | Restricted-Variance Constrained, Reaction Path, and
Transition State Molecular Optimizations Using Gradient-Enhanced Kriging |
title_sort | restricted-variance constrained, reaction path, and
transition state molecular optimizations using gradient-enhanced kriging |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871327/ https://www.ncbi.nlm.nih.gov/pubmed/33382621 http://dx.doi.org/10.1021/acs.jctc.0c01163 |
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