The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)

De novo assembly with whole genome sequencing data of Hydrangea serrata for. fertilis, a great ornamental landscape plant species worldwide, facilitated to generate the complete chloroplast genome sequence in this study. The complete sequence was a circular DNA molecule of 157 730 bp in length, cont...

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Autores principales: Lee, Jonghoon, Lee, Sang-Choon, Joh, Ho Jun, Lee, Hana, Sung, Sang Hyun, Kang, Jung Hwa, Lee, Taek Joo, Yang, Tae-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871655/
https://www.ncbi.nlm.nih.gov/pubmed/33644326
http://dx.doi.org/10.1080/23802359.2015.1137798
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author Lee, Jonghoon
Lee, Sang-Choon
Joh, Ho Jun
Lee, Hana
Sung, Sang Hyun
Kang, Jung Hwa
Lee, Taek Joo
Yang, Tae-Jin
author_facet Lee, Jonghoon
Lee, Sang-Choon
Joh, Ho Jun
Lee, Hana
Sung, Sang Hyun
Kang, Jung Hwa
Lee, Taek Joo
Yang, Tae-Jin
author_sort Lee, Jonghoon
collection PubMed
description De novo assembly with whole genome sequencing data of Hydrangea serrata for. fertilis, a great ornamental landscape plant species worldwide, facilitated to generate the complete chloroplast genome sequence in this study. The complete sequence was a circular DNA molecule of 157 730 bp in length, containing the large single-copy (LSC) region of 86 789 bp, small single-copy (SSC) region of 18 711 bp and two inverted repeats (IRs) regions of 26 115 bp. The genome encoded 114 genes consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Phylogenetic analysis with matK gene-coding sequences of 19 species in family Hydrangeaceae showed a close relationship of H. serrata for. fertilis Nakai with H. macrophylla.
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spelling pubmed-78716552021-02-26 The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae) Lee, Jonghoon Lee, Sang-Choon Joh, Ho Jun Lee, Hana Sung, Sang Hyun Kang, Jung Hwa Lee, Taek Joo Yang, Tae-Jin Mitochondrial DNA B Resour Mitogenome Announcement De novo assembly with whole genome sequencing data of Hydrangea serrata for. fertilis, a great ornamental landscape plant species worldwide, facilitated to generate the complete chloroplast genome sequence in this study. The complete sequence was a circular DNA molecule of 157 730 bp in length, containing the large single-copy (LSC) region of 86 789 bp, small single-copy (SSC) region of 18 711 bp and two inverted repeats (IRs) regions of 26 115 bp. The genome encoded 114 genes consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Phylogenetic analysis with matK gene-coding sequences of 19 species in family Hydrangeaceae showed a close relationship of H. serrata for. fertilis Nakai with H. macrophylla. Taylor & Francis 2016-03-08 /pmc/articles/PMC7871655/ /pubmed/33644326 http://dx.doi.org/10.1080/23802359.2015.1137798 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lee, Jonghoon
Lee, Sang-Choon
Joh, Ho Jun
Lee, Hana
Sung, Sang Hyun
Kang, Jung Hwa
Lee, Taek Joo
Yang, Tae-Jin
The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title_full The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title_fullStr The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title_full_unstemmed The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title_short The complete chloroplast genome sequence of a Korean indigenous ornamental plant Hydrangea serrata for. fertilis Nakai (Hydrangeaceae)
title_sort complete chloroplast genome sequence of a korean indigenous ornamental plant hydrangea serrata for. fertilis nakai (hydrangeaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871655/
https://www.ncbi.nlm.nih.gov/pubmed/33644326
http://dx.doi.org/10.1080/23802359.2015.1137798
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