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The complete chloroplast genome of common walnut (Juglans regia)
Common walnut (Juglans regia L.) is cultivated in temperate regions worldwide for its wood and nuts. The complete chloroplast genome of J. regia was sequenced using the Illumina MiSeq platform. This is the first complete chloroplast sequence for the Juglandaceae, a family that includes numerous spec...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871657/ https://www.ncbi.nlm.nih.gov/pubmed/33644340 http://dx.doi.org/10.1080/23802359.2015.1137804 |
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author | Hu, Yiheng Woeste, Keith E. Dang, Meng Zhou, Tao Feng, Xiaojia Zhao, Guifang Liu, Zhanlin Li, Zhonghu Zhao, Peng |
author_facet | Hu, Yiheng Woeste, Keith E. Dang, Meng Zhou, Tao Feng, Xiaojia Zhao, Guifang Liu, Zhanlin Li, Zhonghu Zhao, Peng |
author_sort | Hu, Yiheng |
collection | PubMed |
description | Common walnut (Juglans regia L.) is cultivated in temperate regions worldwide for its wood and nuts. The complete chloroplast genome of J. regia was sequenced using the Illumina MiSeq platform. This is the first complete chloroplast sequence for the Juglandaceae, a family that includes numerous species of economic importance. The chloroplast genome of J. regia was 160 367 bp in length, with 36.11% GC content. It contains a pair of inverted repeats (26 035 bp) which were separated by a large single copy (89 872 bp) and a small single copy region (18 425 bp). A total of 137 genes were annotated, which included 86 protein-coding genes, three pseudogenes (two ycf15 and one infA), 40 tRNA genes and eight rRNA genes. The neighbour-joining phylogenetic analysis with the reported chloroplast genomes showed that common walnut chloroplasts are most closely related to those of the Fagaceae family. |
format | Online Article Text |
id | pubmed-7871657 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78716572021-02-26 The complete chloroplast genome of common walnut (Juglans regia) Hu, Yiheng Woeste, Keith E. Dang, Meng Zhou, Tao Feng, Xiaojia Zhao, Guifang Liu, Zhanlin Li, Zhonghu Zhao, Peng Mitochondrial DNA B Resour Mitogenome Announcement Common walnut (Juglans regia L.) is cultivated in temperate regions worldwide for its wood and nuts. The complete chloroplast genome of J. regia was sequenced using the Illumina MiSeq platform. This is the first complete chloroplast sequence for the Juglandaceae, a family that includes numerous species of economic importance. The chloroplast genome of J. regia was 160 367 bp in length, with 36.11% GC content. It contains a pair of inverted repeats (26 035 bp) which were separated by a large single copy (89 872 bp) and a small single copy region (18 425 bp). A total of 137 genes were annotated, which included 86 protein-coding genes, three pseudogenes (two ycf15 and one infA), 40 tRNA genes and eight rRNA genes. The neighbour-joining phylogenetic analysis with the reported chloroplast genomes showed that common walnut chloroplasts are most closely related to those of the Fagaceae family. Taylor & Francis 2016-03-24 /pmc/articles/PMC7871657/ /pubmed/33644340 http://dx.doi.org/10.1080/23802359.2015.1137804 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Hu, Yiheng Woeste, Keith E. Dang, Meng Zhou, Tao Feng, Xiaojia Zhao, Guifang Liu, Zhanlin Li, Zhonghu Zhao, Peng The complete chloroplast genome of common walnut (Juglans regia) |
title | The complete chloroplast genome of common walnut (Juglans regia) |
title_full | The complete chloroplast genome of common walnut (Juglans regia) |
title_fullStr | The complete chloroplast genome of common walnut (Juglans regia) |
title_full_unstemmed | The complete chloroplast genome of common walnut (Juglans regia) |
title_short | The complete chloroplast genome of common walnut (Juglans regia) |
title_sort | complete chloroplast genome of common walnut (juglans regia) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871657/ https://www.ncbi.nlm.nih.gov/pubmed/33644340 http://dx.doi.org/10.1080/23802359.2015.1137804 |
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