The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)

The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in...

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Autores principales: Liu, Fengqi, Tembrock, Luke R., Sun, Cheng, Han, Guiqing, Guo, Changhong, Wu, Zhiqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871827/
https://www.ncbi.nlm.nih.gov/pubmed/33644346
http://dx.doi.org/10.1080/23802359.2016.1155093
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author Liu, Fengqi
Tembrock, Luke R.
Sun, Cheng
Han, Guiqing
Guo, Changhong
Wu, Zhiqiang
author_facet Liu, Fengqi
Tembrock, Luke R.
Sun, Cheng
Han, Guiqing
Guo, Changhong
Wu, Zhiqiang
author_sort Liu, Fengqi
collection PubMed
description The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in length and a small single-copy region (SSC) of 12 529 bp in length. The overall GC content of the genome is 38.98%. One hundred and ten unique genes were annotated from the chloroplast genome, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. A total of 20 of these genes are duplicated in the IR regions, 13 genes contain 1 intron and 2 genes (rps12 and ycf3) have 2 introns.
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spelling pubmed-78718272021-02-26 The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae) Liu, Fengqi Tembrock, Luke R. Sun, Cheng Han, Guiqing Guo, Changhong Wu, Zhiqiang Mitochondrial DNA B Resour Mitogenome Announcement The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in length and a small single-copy region (SSC) of 12 529 bp in length. The overall GC content of the genome is 38.98%. One hundred and ten unique genes were annotated from the chloroplast genome, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. A total of 20 of these genes are duplicated in the IR regions, 13 genes contain 1 intron and 2 genes (rps12 and ycf3) have 2 introns. Taylor & Francis 2016-04-11 /pmc/articles/PMC7871827/ /pubmed/33644346 http://dx.doi.org/10.1080/23802359.2016.1155093 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/
spellingShingle Mitogenome Announcement
Liu, Fengqi
Tembrock, Luke R.
Sun, Cheng
Han, Guiqing
Guo, Changhong
Wu, Zhiqiang
The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title_full The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title_fullStr The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title_full_unstemmed The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title_short The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)
title_sort complete plastid genome of the wild rice species oryza brachyantha (poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871827/
https://www.ncbi.nlm.nih.gov/pubmed/33644346
http://dx.doi.org/10.1080/23802359.2016.1155093
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