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The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii

Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amou...

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Autores principales: Cho, Kwang-Soo, Hong, Su-Young, Cho, Ji-Hong, Im, Ju-Seong, Kim, Kyunghee, Oh Lee, Hyun, Jin, Yong-Ik, Mekapogu, Manjulatha, Jang, Dong-Chil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871868/
https://www.ncbi.nlm.nih.gov/pubmed/33644350
http://dx.doi.org/10.1080/23802359.2016.1156492
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author Cho, Kwang-Soo
Hong, Su-Young
Cho, Ji-Hong
Im, Ju-Seong
Kim, Kyunghee
Oh Lee, Hyun
Jin, Yong-Ik
Mekapogu, Manjulatha
Jang, Dong-Chil
author_facet Cho, Kwang-Soo
Hong, Su-Young
Cho, Ji-Hong
Im, Ju-Seong
Kim, Kyunghee
Oh Lee, Hyun
Jin, Yong-Ik
Mekapogu, Manjulatha
Jang, Dong-Chil
author_sort Cho, Kwang-Soo
collection PubMed
description Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. commersonii was 155 525 bp in length, consisted of 86 013 bp of large single copy, 18 366 bp of small single copy region and 25 573 bp of a pair of inverted repeats. A total of 113 genes were annotated including 79 protein-coding genes, 30 tRNA genes and four rRNA genes. Maximum likelihood phylogenetic analysis with 14 Solanaceae species revealed that S. commersonii is much closely related to Solanum tuberosum and S. bulbocastanum.
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spelling pubmed-78718682021-02-26 The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii Cho, Kwang-Soo Hong, Su-Young Cho, Ji-Hong Im, Ju-Seong Kim, Kyunghee Oh Lee, Hyun Jin, Yong-Ik Mekapogu, Manjulatha Jang, Dong-Chil Mitochondrial DNA B Resour Mitogenome Announcement Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. commersonii was 155 525 bp in length, consisted of 86 013 bp of large single copy, 18 366 bp of small single copy region and 25 573 bp of a pair of inverted repeats. A total of 113 genes were annotated including 79 protein-coding genes, 30 tRNA genes and four rRNA genes. Maximum likelihood phylogenetic analysis with 14 Solanaceae species revealed that S. commersonii is much closely related to Solanum tuberosum and S. bulbocastanum. Taylor & Francis 2016-03-29 /pmc/articles/PMC7871868/ /pubmed/33644350 http://dx.doi.org/10.1080/23802359.2016.1156492 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/
spellingShingle Mitogenome Announcement
Cho, Kwang-Soo
Hong, Su-Young
Cho, Ji-Hong
Im, Ju-Seong
Kim, Kyunghee
Oh Lee, Hyun
Jin, Yong-Ik
Mekapogu, Manjulatha
Jang, Dong-Chil
The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title_full The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title_fullStr The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title_full_unstemmed The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title_short The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
title_sort complete chloroplast genome sequences of potato wild relative species, solanum commersonii
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871868/
https://www.ncbi.nlm.nih.gov/pubmed/33644350
http://dx.doi.org/10.1080/23802359.2016.1156492
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