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The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii
Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amou...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871868/ https://www.ncbi.nlm.nih.gov/pubmed/33644350 http://dx.doi.org/10.1080/23802359.2016.1156492 |
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author | Cho, Kwang-Soo Hong, Su-Young Cho, Ji-Hong Im, Ju-Seong Kim, Kyunghee Oh Lee, Hyun Jin, Yong-Ik Mekapogu, Manjulatha Jang, Dong-Chil |
author_facet | Cho, Kwang-Soo Hong, Su-Young Cho, Ji-Hong Im, Ju-Seong Kim, Kyunghee Oh Lee, Hyun Jin, Yong-Ik Mekapogu, Manjulatha Jang, Dong-Chil |
author_sort | Cho, Kwang-Soo |
collection | PubMed |
description | Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. commersonii was 155 525 bp in length, consisted of 86 013 bp of large single copy, 18 366 bp of small single copy region and 25 573 bp of a pair of inverted repeats. A total of 113 genes were annotated including 79 protein-coding genes, 30 tRNA genes and four rRNA genes. Maximum likelihood phylogenetic analysis with 14 Solanaceae species revealed that S. commersonii is much closely related to Solanum tuberosum and S. bulbocastanum. |
format | Online Article Text |
id | pubmed-7871868 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78718682021-02-26 The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii Cho, Kwang-Soo Hong, Su-Young Cho, Ji-Hong Im, Ju-Seong Kim, Kyunghee Oh Lee, Hyun Jin, Yong-Ik Mekapogu, Manjulatha Jang, Dong-Chil Mitochondrial DNA B Resour Mitogenome Announcement Solanum commersonii Dunal is a well-known wild potato belonging to Solanaceae family and commonly used as materials for somatic hybridization due to various biotic and abiotic stress resistances. The complete chloroplast genome of S. commersonii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. commersonii was 155 525 bp in length, consisted of 86 013 bp of large single copy, 18 366 bp of small single copy region and 25 573 bp of a pair of inverted repeats. A total of 113 genes were annotated including 79 protein-coding genes, 30 tRNA genes and four rRNA genes. Maximum likelihood phylogenetic analysis with 14 Solanaceae species revealed that S. commersonii is much closely related to Solanum tuberosum and S. bulbocastanum. Taylor & Francis 2016-03-29 /pmc/articles/PMC7871868/ /pubmed/33644350 http://dx.doi.org/10.1080/23802359.2016.1156492 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Cho, Kwang-Soo Hong, Su-Young Cho, Ji-Hong Im, Ju-Seong Kim, Kyunghee Oh Lee, Hyun Jin, Yong-Ik Mekapogu, Manjulatha Jang, Dong-Chil The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title | The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title_full | The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title_fullStr | The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title_full_unstemmed | The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title_short | The complete chloroplast genome sequences of potato wild relative species, Solanum commersonii |
title_sort | complete chloroplast genome sequences of potato wild relative species, solanum commersonii |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7871868/ https://www.ncbi.nlm.nih.gov/pubmed/33644350 http://dx.doi.org/10.1080/23802359.2016.1156492 |
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