The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China

Nardostachys jatamans is an endemic herb in China, distributes mainly in Southeast Gansu, South Qinghai and West Sichuan of Qinghai-Tibet Plateau. In this study, the complete chloroplast genome (a typical quadripartite structure) sequence of N. jatamans was reported. The length of the DNA molecule w...

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Autores principales: Deng, Jiabin, Liang, Heng, Luo, Xuqiang, Zhang, Wei, Gao, Gang, Yang, Ruiwu, Ahmad, Khawaja Shafique, Zhang, Guiling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872520/
https://www.ncbi.nlm.nih.gov/pubmed/33659647
http://dx.doi.org/10.1080/23802359.2020.1861568
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author Deng, Jiabin
Liang, Heng
Luo, Xuqiang
Zhang, Wei
Gao, Gang
Yang, Ruiwu
Ahmad, Khawaja Shafique
Zhang, Guiling
author_facet Deng, Jiabin
Liang, Heng
Luo, Xuqiang
Zhang, Wei
Gao, Gang
Yang, Ruiwu
Ahmad, Khawaja Shafique
Zhang, Guiling
author_sort Deng, Jiabin
collection PubMed
description Nardostachys jatamans is an endemic herb in China, distributes mainly in Southeast Gansu, South Qinghai and West Sichuan of Qinghai-Tibet Plateau. In this study, the complete chloroplast genome (a typical quadripartite structure) sequence of N. jatamans was reported. The length of the DNA molecule was 155,268 bp with a large single-copy region (LSC: 87,263 bp), small single-copy region (SSC: 17,327 bp) and inverted repeats (IRa and IRb: 25,339 bp). The overall GC content was 38.56%. It has a total of 129 genes, containing 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic analysis has shown that N. jatamans is sister to Valeriana offcinalis. The chloroplast genome provides the basis for development and utilization of N. jatamans in future.
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spelling pubmed-78725202021-03-02 The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China Deng, Jiabin Liang, Heng Luo, Xuqiang Zhang, Wei Gao, Gang Yang, Ruiwu Ahmad, Khawaja Shafique Zhang, Guiling Mitochondrial DNA B Resour Mitogenome Announcement Nardostachys jatamans is an endemic herb in China, distributes mainly in Southeast Gansu, South Qinghai and West Sichuan of Qinghai-Tibet Plateau. In this study, the complete chloroplast genome (a typical quadripartite structure) sequence of N. jatamans was reported. The length of the DNA molecule was 155,268 bp with a large single-copy region (LSC: 87,263 bp), small single-copy region (SSC: 17,327 bp) and inverted repeats (IRa and IRb: 25,339 bp). The overall GC content was 38.56%. It has a total of 129 genes, containing 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic analysis has shown that N. jatamans is sister to Valeriana offcinalis. The chloroplast genome provides the basis for development and utilization of N. jatamans in future. Taylor & Francis 2021-01-27 /pmc/articles/PMC7872520/ /pubmed/33659647 http://dx.doi.org/10.1080/23802359.2020.1861568 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Deng, Jiabin
Liang, Heng
Luo, Xuqiang
Zhang, Wei
Gao, Gang
Yang, Ruiwu
Ahmad, Khawaja Shafique
Zhang, Guiling
The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title_full The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title_fullStr The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title_full_unstemmed The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title_short The complete chloroplast genome sequence of herb Nardostachys jatamans (family: Valerianaceae) in China
title_sort complete chloroplast genome sequence of herb nardostachys jatamans (family: valerianaceae) in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872520/
https://www.ncbi.nlm.nih.gov/pubmed/33659647
http://dx.doi.org/10.1080/23802359.2020.1861568
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