Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)

In this study, we sequenced the complete mitochondrial genome (mitogenome) of the Huangshan Black chicken (HBC). Results showed that the complete HBC mitogenome was 16,785 bp in size, comprising 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D...

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Autores principales: Jin, Sihua, Zang, He, He, Peili, Jiang, Tingting, Pan, Shenqiang, Geng, Zhaoyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872527/
https://www.ncbi.nlm.nih.gov/pubmed/33659646
http://dx.doi.org/10.1080/23802359.2020.1860694
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author Jin, Sihua
Zang, He
He, Peili
Jiang, Tingting
Pan, Shenqiang
Geng, Zhaoyu
author_facet Jin, Sihua
Zang, He
He, Peili
Jiang, Tingting
Pan, Shenqiang
Geng, Zhaoyu
author_sort Jin, Sihua
collection PubMed
description In this study, we sequenced the complete mitochondrial genome (mitogenome) of the Huangshan Black chicken (HBC). Results showed that the complete HBC mitogenome was 16,785 bp in size, comprising 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D-loop). The overall nucleotide composition was 32.5% for C, 30.3% for A, 23.7% for T, and 13.5% for G. Phylogenetic analysis showed that the HBC mitogenome was clustered with Xianju chicken, which belonged to the haplogroup D2. Our results therefore demonstrate that the origin of HBC corresponds to haplogroup D2 distribution and might have at least one maternal lineage originated from Southeast Asia.
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spelling pubmed-78725272021-03-02 Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus) Jin, Sihua Zang, He He, Peili Jiang, Tingting Pan, Shenqiang Geng, Zhaoyu Mitochondrial DNA B Resour Mitogenome Announcement In this study, we sequenced the complete mitochondrial genome (mitogenome) of the Huangshan Black chicken (HBC). Results showed that the complete HBC mitogenome was 16,785 bp in size, comprising 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D-loop). The overall nucleotide composition was 32.5% for C, 30.3% for A, 23.7% for T, and 13.5% for G. Phylogenetic analysis showed that the HBC mitogenome was clustered with Xianju chicken, which belonged to the haplogroup D2. Our results therefore demonstrate that the origin of HBC corresponds to haplogroup D2 distribution and might have at least one maternal lineage originated from Southeast Asia. Taylor & Francis 2021-01-27 /pmc/articles/PMC7872527/ /pubmed/33659646 http://dx.doi.org/10.1080/23802359.2020.1860694 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jin, Sihua
Zang, He
He, Peili
Jiang, Tingting
Pan, Shenqiang
Geng, Zhaoyu
Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title_full Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title_fullStr Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title_full_unstemmed Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title_short Complete mitochondrial genome and phylogenetic analysis of Huangshan Black chicken (Gallus gallus)
title_sort complete mitochondrial genome and phylogenetic analysis of huangshan black chicken (gallus gallus)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872527/
https://www.ncbi.nlm.nih.gov/pubmed/33659646
http://dx.doi.org/10.1080/23802359.2020.1860694
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