The complete chloroplast genome sequence of Ficus altissima (Moraceae)

Ficus altissima plays an important role on biodiversity in tropical forests. In this study, the complete chloroplast genome sequence and the genome features of F. altissima were analyzed using the Illumina NovaSeq platform. The whole chloroplast genome sequence of F. altissima is 160,251 including a...

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Detalles Bibliográficos
Autores principales: Zhang, Yuan, Zhang, Ruli, Deng, Chongli, Yang, Junwen, Deng, Guobin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872538/
https://www.ncbi.nlm.nih.gov/pubmed/33659654
http://dx.doi.org/10.1080/23802359.2020.1863874
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author Zhang, Yuan
Zhang, Ruli
Deng, Chongli
Yang, Junwen
Deng, Guobin
author_facet Zhang, Yuan
Zhang, Ruli
Deng, Chongli
Yang, Junwen
Deng, Guobin
author_sort Zhang, Yuan
collection PubMed
description Ficus altissima plays an important role on biodiversity in tropical forests. In this study, the complete chloroplast genome sequence and the genome features of F. altissima were analyzed using the Illumina NovaSeq platform. The whole chloroplast genome sequence of F. altissima is 160,251 including a large single-copy region (LSC, 88,468 bp), a small single-copy region (SSC, 20,009 bp), and a pair of repeat regions (IRs, 25,887 bp, each). Further gene annotation revealed the chloroplast genome contains 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A total of 82 simple sequence repeats (SSRs) were identified in the chloroplast genome. Phylogenetic development was analyzed based on F. altissima with other species of Moraceae. This information will be useful for study on the evolution and genetic diversity of F. altissima in the future.
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spelling pubmed-78725382021-03-02 The complete chloroplast genome sequence of Ficus altissima (Moraceae) Zhang, Yuan Zhang, Ruli Deng, Chongli Yang, Junwen Deng, Guobin Mitochondrial DNA B Resour Mitogenome Announcement Ficus altissima plays an important role on biodiversity in tropical forests. In this study, the complete chloroplast genome sequence and the genome features of F. altissima were analyzed using the Illumina NovaSeq platform. The whole chloroplast genome sequence of F. altissima is 160,251 including a large single-copy region (LSC, 88,468 bp), a small single-copy region (SSC, 20,009 bp), and a pair of repeat regions (IRs, 25,887 bp, each). Further gene annotation revealed the chloroplast genome contains 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A total of 82 simple sequence repeats (SSRs) were identified in the chloroplast genome. Phylogenetic development was analyzed based on F. altissima with other species of Moraceae. This information will be useful for study on the evolution and genetic diversity of F. altissima in the future. Taylor & Francis 2021-02-03 /pmc/articles/PMC7872538/ /pubmed/33659654 http://dx.doi.org/10.1080/23802359.2020.1863874 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Yuan
Zhang, Ruli
Deng, Chongli
Yang, Junwen
Deng, Guobin
The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title_full The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title_fullStr The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title_full_unstemmed The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title_short The complete chloroplast genome sequence of Ficus altissima (Moraceae)
title_sort complete chloroplast genome sequence of ficus altissima (moraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872538/
https://www.ncbi.nlm.nih.gov/pubmed/33659654
http://dx.doi.org/10.1080/23802359.2020.1863874
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