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The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)

Camellia sinensis var. sinensis cultivar Tieguanyin (TGY) is an important Oolong tea variety in China. In this study, we reported a complete chloroplast (cp) genome based on the Illumina sequencing technology and combined de novo and reference-guided assembly strategies. The complete cp genome of ‘T...

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Autores principales: Chen, Shuai, Li, Ruoyu, Ma, Yaying, Lei, Siru, Ming, Ray, Zhang, Xingtan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872547/
https://www.ncbi.nlm.nih.gov/pubmed/33659690
http://dx.doi.org/10.1080/23802359.2020.1869615
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author Chen, Shuai
Li, Ruoyu
Ma, Yaying
Lei, Siru
Ming, Ray
Zhang, Xingtan
author_facet Chen, Shuai
Li, Ruoyu
Ma, Yaying
Lei, Siru
Ming, Ray
Zhang, Xingtan
author_sort Chen, Shuai
collection PubMed
description Camellia sinensis var. sinensis cultivar Tieguanyin (TGY) is an important Oolong tea variety in China. In this study, we reported a complete chloroplast (cp) genome based on the Illumina sequencing technology and combined de novo and reference-guided assembly strategies. The complete cp genome of ‘TGY’ displayed the regular quadripartite structure: a total of 157,126 bp in length, comprising a large single-copy (LSC, 86,904 bp) region, a small single-copy (SSC, 18,532 bp) region, and a pair of inverted repeats (IRs, 26,095 bp) regions. A lot of 132 predicted genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content is 37.3%. Maximum likelihood (ML) phylogenetic tree involving 18 cp genomes of the Camellia genus revealed a relatively independent event of local domestication among three types of cultivars. The complete cp genome of ‘TGY’ provides an insight into tea plants for further understanding evolutionary research on tea plants.
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spelling pubmed-78725472021-03-02 The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae) Chen, Shuai Li, Ruoyu Ma, Yaying Lei, Siru Ming, Ray Zhang, Xingtan Mitochondrial DNA B Resour Mitogenome Announcement Camellia sinensis var. sinensis cultivar Tieguanyin (TGY) is an important Oolong tea variety in China. In this study, we reported a complete chloroplast (cp) genome based on the Illumina sequencing technology and combined de novo and reference-guided assembly strategies. The complete cp genome of ‘TGY’ displayed the regular quadripartite structure: a total of 157,126 bp in length, comprising a large single-copy (LSC, 86,904 bp) region, a small single-copy (SSC, 18,532 bp) region, and a pair of inverted repeats (IRs, 26,095 bp) regions. A lot of 132 predicted genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content is 37.3%. Maximum likelihood (ML) phylogenetic tree involving 18 cp genomes of the Camellia genus revealed a relatively independent event of local domestication among three types of cultivars. The complete cp genome of ‘TGY’ provides an insight into tea plants for further understanding evolutionary research on tea plants. Taylor & Francis 2021-02-08 /pmc/articles/PMC7872547/ /pubmed/33659690 http://dx.doi.org/10.1080/23802359.2020.1869615 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Shuai
Li, Ruoyu
Ma, Yaying
Lei, Siru
Ming, Ray
Zhang, Xingtan
The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title_full The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title_fullStr The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title_full_unstemmed The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title_short The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar Tieguanyin (Theaceae)
title_sort complete chloroplast genome sequence of camellia sinensis var. sinensis cultivar tieguanyin (theaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872547/
https://www.ncbi.nlm.nih.gov/pubmed/33659690
http://dx.doi.org/10.1080/23802359.2020.1869615
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