The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)

In this study, the complete chloroplast genome of Chaetoceros muellerii was sequenced by using PacBio sequencing platform. The chloroplast genome was 116,284 bp in length, harboring a large single copy (LSC) region of 61,946 bp, a small single copy (SSC) region of 39,308 bp, and a pair of inverted r...

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Detalles Bibliográficos
Autores principales: Li, Yajun, Deng, Xiaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Rapid Communications
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872575/
https://www.ncbi.nlm.nih.gov/pubmed/33659682
http://dx.doi.org/10.1080/23802359.2020.1869608
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author Li, Yajun
Deng, Xiaodong
author_facet Li, Yajun
Deng, Xiaodong
author_sort Li, Yajun
collection PubMed
description In this study, the complete chloroplast genome of Chaetoceros muellerii was sequenced by using PacBio sequencing platform. The chloroplast genome was 116,284 bp in length, harboring a large single copy (LSC) region of 61,946 bp, a small single copy (SSC) region of 39,308 bp, and a pair of inverted repeats (IR) regions of 7515 bp. The overall GC content was 30.86%. The chloroplast genome of C. muellerii contained 131 genes in total, including 95 protein-coding genes, 30 transfer RNA (tRNA) genes and 6 ribosomal RNA (rRNA) genes. The phylogenetic analysis revealed that C. muellerii was closely related to Chaetoceros simplex with 100% bootstrap values. This study will contribute to the phylogenetic and taxonomic analysis of species in the family Chaetoceroceae.
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spelling pubmed-78725752021-03-02 The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae) Li, Yajun Deng, Xiaodong Mitochondrial DNA B Resour Rapid Communications In this study, the complete chloroplast genome of Chaetoceros muellerii was sequenced by using PacBio sequencing platform. The chloroplast genome was 116,284 bp in length, harboring a large single copy (LSC) region of 61,946 bp, a small single copy (SSC) region of 39,308 bp, and a pair of inverted repeats (IR) regions of 7515 bp. The overall GC content was 30.86%. The chloroplast genome of C. muellerii contained 131 genes in total, including 95 protein-coding genes, 30 transfer RNA (tRNA) genes and 6 ribosomal RNA (rRNA) genes. The phylogenetic analysis revealed that C. muellerii was closely related to Chaetoceros simplex with 100% bootstrap values. This study will contribute to the phylogenetic and taxonomic analysis of species in the family Chaetoceroceae. Taylor & Francis 2021-02-08 /pmc/articles/PMC7872575/ /pubmed/33659682 http://dx.doi.org/10.1080/23802359.2020.1869608 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Rapid Communications
Li, Yajun
Deng, Xiaodong
The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title_full The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title_fullStr The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title_full_unstemmed The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title_short The complete chloroplast genome of the marine microalgae Chaetoceros muellerii (Chaetoceroceae)
title_sort complete chloroplast genome of the marine microalgae chaetoceros muellerii (chaetoceroceae)
topic Rapid Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872575/
https://www.ncbi.nlm.nih.gov/pubmed/33659682
http://dx.doi.org/10.1080/23802359.2020.1869608
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