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Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions
Acetogens are anaerobic bacteria that utilise gaseous feedstocks such as carbon monoxide (CO) and carbon dioxide (CO(2)) to synthesise biomass and various metabolites via the energetically efficient Wood-Ljungdahl pathway. Because of this pathway, acetogens have been considered as a novel platform t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873083/ https://www.ncbi.nlm.nih.gov/pubmed/33563990 http://dx.doi.org/10.1038/s41597-021-00837-7 |
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author | Song, Yoseb Bae, Jiyun Shin, Jongoh Jin, Sangrak Lee, Jung-Kul Kim, Sun Chang Cho, Suhyung Cho, Byung-Kwan |
author_facet | Song, Yoseb Bae, Jiyun Shin, Jongoh Jin, Sangrak Lee, Jung-Kul Kim, Sun Chang Cho, Suhyung Cho, Byung-Kwan |
author_sort | Song, Yoseb |
collection | PubMed |
description | Acetogens are anaerobic bacteria that utilise gaseous feedstocks such as carbon monoxide (CO) and carbon dioxide (CO(2)) to synthesise biomass and various metabolites via the energetically efficient Wood-Ljungdahl pathway. Because of this pathway, acetogens have been considered as a novel platform to produce biochemicals from gaseous feedstocks, potentially replacing the conventional thermochemical processes. Despite their advantages, a lack of systematic understanding of the transcriptional and translational regulation in acetogens during autotrophic growth limits the rational strain design to produce the desired products. To overcome this problem, we presented RNA sequencing and ribosome profiling data of four acetogens cultivated under heterotrophic and autotrophic conditions, providing data on genome-scale transcriptional and translational responses of acetogens during CO(2) fixation. These data facilitate the discovery of regulatory elements embedded in their genomes, which could be utilised to engineer strains to achieve better growth and productivity. We anticipate that these data will expand our understanding of the processes of CO(2) fixation and will help in the designing of strains for the desired biochemical production. |
format | Online Article Text |
id | pubmed-7873083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78730832021-02-16 Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions Song, Yoseb Bae, Jiyun Shin, Jongoh Jin, Sangrak Lee, Jung-Kul Kim, Sun Chang Cho, Suhyung Cho, Byung-Kwan Sci Data Data Descriptor Acetogens are anaerobic bacteria that utilise gaseous feedstocks such as carbon monoxide (CO) and carbon dioxide (CO(2)) to synthesise biomass and various metabolites via the energetically efficient Wood-Ljungdahl pathway. Because of this pathway, acetogens have been considered as a novel platform to produce biochemicals from gaseous feedstocks, potentially replacing the conventional thermochemical processes. Despite their advantages, a lack of systematic understanding of the transcriptional and translational regulation in acetogens during autotrophic growth limits the rational strain design to produce the desired products. To overcome this problem, we presented RNA sequencing and ribosome profiling data of four acetogens cultivated under heterotrophic and autotrophic conditions, providing data on genome-scale transcriptional and translational responses of acetogens during CO(2) fixation. These data facilitate the discovery of regulatory elements embedded in their genomes, which could be utilised to engineer strains to achieve better growth and productivity. We anticipate that these data will expand our understanding of the processes of CO(2) fixation and will help in the designing of strains for the desired biochemical production. Nature Publishing Group UK 2021-02-09 /pmc/articles/PMC7873083/ /pubmed/33563990 http://dx.doi.org/10.1038/s41597-021-00837-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Song, Yoseb Bae, Jiyun Shin, Jongoh Jin, Sangrak Lee, Jung-Kul Kim, Sun Chang Cho, Suhyung Cho, Byung-Kwan Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title | Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title_full | Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title_fullStr | Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title_full_unstemmed | Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title_short | Transcriptome and translatome of CO(2) fixing acetogens under heterotrophic and autotrophic conditions |
title_sort | transcriptome and translatome of co(2) fixing acetogens under heterotrophic and autotrophic conditions |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873083/ https://www.ncbi.nlm.nih.gov/pubmed/33563990 http://dx.doi.org/10.1038/s41597-021-00837-7 |
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