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Forecasting influenza activity using machine-learned mobility map

Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus...

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Autores principales: Venkatramanan, Srinivasan, Sadilek, Adam, Fadikar, Arindam, Barrett, Christopher L., Biggerstaff, Matthew, Chen, Jiangzhuo, Dotiwalla, Xerxes, Eastham, Paul, Gipson, Bryant, Higdon, Dave, Kucuktunc, Onur, Lieber, Allison, Lewis, Bryan L., Reynolds, Zane, Vullikanti, Anil K., Wang, Lijing, Marathe, Madhav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873234/
https://www.ncbi.nlm.nih.gov/pubmed/33563980
http://dx.doi.org/10.1038/s41467-021-21018-5
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author Venkatramanan, Srinivasan
Sadilek, Adam
Fadikar, Arindam
Barrett, Christopher L.
Biggerstaff, Matthew
Chen, Jiangzhuo
Dotiwalla, Xerxes
Eastham, Paul
Gipson, Bryant
Higdon, Dave
Kucuktunc, Onur
Lieber, Allison
Lewis, Bryan L.
Reynolds, Zane
Vullikanti, Anil K.
Wang, Lijing
Marathe, Madhav
author_facet Venkatramanan, Srinivasan
Sadilek, Adam
Fadikar, Arindam
Barrett, Christopher L.
Biggerstaff, Matthew
Chen, Jiangzhuo
Dotiwalla, Xerxes
Eastham, Paul
Gipson, Bryant
Higdon, Dave
Kucuktunc, Onur
Lieber, Allison
Lewis, Bryan L.
Reynolds, Zane
Vullikanti, Anil K.
Wang, Lijing
Marathe, Madhav
author_sort Venkatramanan, Srinivasan
collection PubMed
description Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus on a machine-learned anonymized mobility map (hereon referred to as AMM) aggregated over hundreds of millions of smartphones and evaluate its utility in forecasting epidemics. We factor AMM into a metapopulation model to retrospectively forecast influenza in the USA and Australia. We show that the AMM model performs on-par with those based on commuter surveys, which are sparsely available and expensive. We also compare it with gravity and radiation based models of mobility, and find that the radiation model’s performance is quite similar to AMM and commuter flows. Additionally, we demonstrate our model’s ability to predict disease spread even across state boundaries. Our work contributes towards developing timely infectious disease forecasting at a global scale using human mobility datasets expanding their applications in the area of infectious disease epidemiology.
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spelling pubmed-78732342021-02-16 Forecasting influenza activity using machine-learned mobility map Venkatramanan, Srinivasan Sadilek, Adam Fadikar, Arindam Barrett, Christopher L. Biggerstaff, Matthew Chen, Jiangzhuo Dotiwalla, Xerxes Eastham, Paul Gipson, Bryant Higdon, Dave Kucuktunc, Onur Lieber, Allison Lewis, Bryan L. Reynolds, Zane Vullikanti, Anil K. Wang, Lijing Marathe, Madhav Nat Commun Article Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus on a machine-learned anonymized mobility map (hereon referred to as AMM) aggregated over hundreds of millions of smartphones and evaluate its utility in forecasting epidemics. We factor AMM into a metapopulation model to retrospectively forecast influenza in the USA and Australia. We show that the AMM model performs on-par with those based on commuter surveys, which are sparsely available and expensive. We also compare it with gravity and radiation based models of mobility, and find that the radiation model’s performance is quite similar to AMM and commuter flows. Additionally, we demonstrate our model’s ability to predict disease spread even across state boundaries. Our work contributes towards developing timely infectious disease forecasting at a global scale using human mobility datasets expanding their applications in the area of infectious disease epidemiology. Nature Publishing Group UK 2021-02-09 /pmc/articles/PMC7873234/ /pubmed/33563980 http://dx.doi.org/10.1038/s41467-021-21018-5 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Venkatramanan, Srinivasan
Sadilek, Adam
Fadikar, Arindam
Barrett, Christopher L.
Biggerstaff, Matthew
Chen, Jiangzhuo
Dotiwalla, Xerxes
Eastham, Paul
Gipson, Bryant
Higdon, Dave
Kucuktunc, Onur
Lieber, Allison
Lewis, Bryan L.
Reynolds, Zane
Vullikanti, Anil K.
Wang, Lijing
Marathe, Madhav
Forecasting influenza activity using machine-learned mobility map
title Forecasting influenza activity using machine-learned mobility map
title_full Forecasting influenza activity using machine-learned mobility map
title_fullStr Forecasting influenza activity using machine-learned mobility map
title_full_unstemmed Forecasting influenza activity using machine-learned mobility map
title_short Forecasting influenza activity using machine-learned mobility map
title_sort forecasting influenza activity using machine-learned mobility map
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873234/
https://www.ncbi.nlm.nih.gov/pubmed/33563980
http://dx.doi.org/10.1038/s41467-021-21018-5
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