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A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data
The purpose of this paper is to introduce a useful online interactive dashboard (https://mahdisalehi.shinyapps.io/Covid19Dashboard/) that visualize and follow confirmed cases of COVID-19 in real-time. The dashboard was made publicly available on 6 April 2020 to illustrate the counts of confirmed cas...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873562/ https://www.ncbi.nlm.nih.gov/pubmed/33585390 http://dx.doi.org/10.3389/fpubh.2020.623624 |
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author | Salehi, Mahdi Arashi, Mohammad Bekker, Andriette Ferreira, Johan Chen, Ding-Geng Esmaeili, Foad Frances, Motala |
author_facet | Salehi, Mahdi Arashi, Mohammad Bekker, Andriette Ferreira, Johan Chen, Ding-Geng Esmaeili, Foad Frances, Motala |
author_sort | Salehi, Mahdi |
collection | PubMed |
description | The purpose of this paper is to introduce a useful online interactive dashboard (https://mahdisalehi.shinyapps.io/Covid19Dashboard/) that visualize and follow confirmed cases of COVID-19 in real-time. The dashboard was made publicly available on 6 April 2020 to illustrate the counts of confirmed cases, deaths, and recoveries of COVID-19 at the level of country or continent. This dashboard is intended as a user-friendly dashboard for researchers as well as the general public to track the COVID-19 pandemic, and is generated from trusted data sources and built in open-source R software (Shiny in particular); ensuring a high sense of transparency and reproducibility. The R Shiny framework serves as a platform for visualization and analysis of the data, as well as an advance to capitalize on existing data curation to support and enable open science. Coded analysis here includes logistic and Gompertz growth models, as two mathematical tools for predicting the future of the COVID-19 pandemic, as well as the Moran's index metric, which gives a spatial perspective via heat maps that may assist in the identification of latent responses and behavioral patterns. This analysis provides real-time statistical application aiming to make sense to academic- and public consumers of the large amount of data that is being accumulated due to the COVID-19 pandemic. |
format | Online Article Text |
id | pubmed-7873562 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78735622021-02-11 A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data Salehi, Mahdi Arashi, Mohammad Bekker, Andriette Ferreira, Johan Chen, Ding-Geng Esmaeili, Foad Frances, Motala Front Public Health Public Health The purpose of this paper is to introduce a useful online interactive dashboard (https://mahdisalehi.shinyapps.io/Covid19Dashboard/) that visualize and follow confirmed cases of COVID-19 in real-time. The dashboard was made publicly available on 6 April 2020 to illustrate the counts of confirmed cases, deaths, and recoveries of COVID-19 at the level of country or continent. This dashboard is intended as a user-friendly dashboard for researchers as well as the general public to track the COVID-19 pandemic, and is generated from trusted data sources and built in open-source R software (Shiny in particular); ensuring a high sense of transparency and reproducibility. The R Shiny framework serves as a platform for visualization and analysis of the data, as well as an advance to capitalize on existing data curation to support and enable open science. Coded analysis here includes logistic and Gompertz growth models, as two mathematical tools for predicting the future of the COVID-19 pandemic, as well as the Moran's index metric, which gives a spatial perspective via heat maps that may assist in the identification of latent responses and behavioral patterns. This analysis provides real-time statistical application aiming to make sense to academic- and public consumers of the large amount of data that is being accumulated due to the COVID-19 pandemic. Frontiers Media S.A. 2021-01-27 /pmc/articles/PMC7873562/ /pubmed/33585390 http://dx.doi.org/10.3389/fpubh.2020.623624 Text en Copyright © 2021 Salehi, Arashi, Bekker, Ferreira, Chen, Esmaeili and Frances. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Public Health Salehi, Mahdi Arashi, Mohammad Bekker, Andriette Ferreira, Johan Chen, Ding-Geng Esmaeili, Foad Frances, Motala A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title | A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title_full | A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title_fullStr | A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title_full_unstemmed | A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title_short | A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data |
title_sort | synergetic r-shiny portal for modeling and tracking of covid-19 data |
topic | Public Health |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873562/ https://www.ncbi.nlm.nih.gov/pubmed/33585390 http://dx.doi.org/10.3389/fpubh.2020.623624 |
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