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Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer

OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering ana...

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Autores principales: Yang, Xi, Qi, Quan, Pan, Yuefen, Zhou, Qing, Wu, Yinhang, Zhuang, Jing, Xu, Jiamin, Pan, Mingyue, Han, Shuwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873865/
https://www.ncbi.nlm.nih.gov/pubmed/33584715
http://dx.doi.org/10.3389/fimmu.2020.620196
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author Yang, Xi
Qi, Quan
Pan, Yuefen
Zhou, Qing
Wu, Yinhang
Zhuang, Jing
Xu, Jiamin
Pan, Mingyue
Han, Shuwen
author_facet Yang, Xi
Qi, Quan
Pan, Yuefen
Zhou, Qing
Wu, Yinhang
Zhuang, Jing
Xu, Jiamin
Pan, Mingyue
Han, Shuwen
author_sort Yang, Xi
collection PubMed
description OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering analysis was performed to identify functionally distinct T cell populations, followed by correlations and ligand-receptor interactions across cell types. Finally, differential analysis of the tumor-infiltrating T cells between colon cancer and rectal cancer were carried out. RESULTS: A total of eight distinct T cell populations were identified from tumor tissue. Tumor-Treg showed a strong correlation with Th17 cells. CD8(+)T(RM) was positively correlated with CD8(+)IEL. Seven distinct T cell populations were identified from peripheral blood. There was a strong correlation between CD4+T(N) and CD4+blood-T(CM). Colon cancer and rectal cancer showed differences in the composition of tumor-infiltrating T cell populations. Tumor-infiltrating CD8(+)IEL cells were found in rectal cancer but not in colon cancer, while CD8(+) T(N) cells were found in the peripheral blood of colon cancer but not in that of rectal cancer. A larger number of tumor-infiltrating CD8(+) Tex (88.94%) cells were found in the colon cancer than in the rectal cancer (11.06%). The T cells of the colon and rectal cancers showed changes in gene expression pattern. CONCLUSIONS: We characterized the T cell populations in the CRC tumor tissue and peripheral blood.
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spelling pubmed-78738652021-02-11 Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer Yang, Xi Qi, Quan Pan, Yuefen Zhou, Qing Wu, Yinhang Zhuang, Jing Xu, Jiamin Pan, Mingyue Han, Shuwen Front Immunol Immunology OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering analysis was performed to identify functionally distinct T cell populations, followed by correlations and ligand-receptor interactions across cell types. Finally, differential analysis of the tumor-infiltrating T cells between colon cancer and rectal cancer were carried out. RESULTS: A total of eight distinct T cell populations were identified from tumor tissue. Tumor-Treg showed a strong correlation with Th17 cells. CD8(+)T(RM) was positively correlated with CD8(+)IEL. Seven distinct T cell populations were identified from peripheral blood. There was a strong correlation between CD4+T(N) and CD4+blood-T(CM). Colon cancer and rectal cancer showed differences in the composition of tumor-infiltrating T cell populations. Tumor-infiltrating CD8(+)IEL cells were found in rectal cancer but not in colon cancer, while CD8(+) T(N) cells were found in the peripheral blood of colon cancer but not in that of rectal cancer. A larger number of tumor-infiltrating CD8(+) Tex (88.94%) cells were found in the colon cancer than in the rectal cancer (11.06%). The T cells of the colon and rectal cancers showed changes in gene expression pattern. CONCLUSIONS: We characterized the T cell populations in the CRC tumor tissue and peripheral blood. Frontiers Media S.A. 2021-01-22 /pmc/articles/PMC7873865/ /pubmed/33584715 http://dx.doi.org/10.3389/fimmu.2020.620196 Text en Copyright © 2021 Yang, Qi, Pan, Zhou, Wu, Zhuang, Xu, Pan and Han http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Yang, Xi
Qi, Quan
Pan, Yuefen
Zhou, Qing
Wu, Yinhang
Zhuang, Jing
Xu, Jiamin
Pan, Mingyue
Han, Shuwen
Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title_full Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title_fullStr Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title_full_unstemmed Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title_short Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
title_sort single-cell analysis reveals characterization of infiltrating t cells in moderately differentiated colorectal cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873865/
https://www.ncbi.nlm.nih.gov/pubmed/33584715
http://dx.doi.org/10.3389/fimmu.2020.620196
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