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Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer
OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering ana...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873865/ https://www.ncbi.nlm.nih.gov/pubmed/33584715 http://dx.doi.org/10.3389/fimmu.2020.620196 |
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author | Yang, Xi Qi, Quan Pan, Yuefen Zhou, Qing Wu, Yinhang Zhuang, Jing Xu, Jiamin Pan, Mingyue Han, Shuwen |
author_facet | Yang, Xi Qi, Quan Pan, Yuefen Zhou, Qing Wu, Yinhang Zhuang, Jing Xu, Jiamin Pan, Mingyue Han, Shuwen |
author_sort | Yang, Xi |
collection | PubMed |
description | OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering analysis was performed to identify functionally distinct T cell populations, followed by correlations and ligand-receptor interactions across cell types. Finally, differential analysis of the tumor-infiltrating T cells between colon cancer and rectal cancer were carried out. RESULTS: A total of eight distinct T cell populations were identified from tumor tissue. Tumor-Treg showed a strong correlation with Th17 cells. CD8(+)T(RM) was positively correlated with CD8(+)IEL. Seven distinct T cell populations were identified from peripheral blood. There was a strong correlation between CD4+T(N) and CD4+blood-T(CM). Colon cancer and rectal cancer showed differences in the composition of tumor-infiltrating T cell populations. Tumor-infiltrating CD8(+)IEL cells were found in rectal cancer but not in colon cancer, while CD8(+) T(N) cells were found in the peripheral blood of colon cancer but not in that of rectal cancer. A larger number of tumor-infiltrating CD8(+) Tex (88.94%) cells were found in the colon cancer than in the rectal cancer (11.06%). The T cells of the colon and rectal cancers showed changes in gene expression pattern. CONCLUSIONS: We characterized the T cell populations in the CRC tumor tissue and peripheral blood. |
format | Online Article Text |
id | pubmed-7873865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78738652021-02-11 Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer Yang, Xi Qi, Quan Pan, Yuefen Zhou, Qing Wu, Yinhang Zhuang, Jing Xu, Jiamin Pan, Mingyue Han, Shuwen Front Immunol Immunology OBJECTIVE: This study aimed to characterize the tumor-infiltrating T cells in moderately differentiated colorectal cancer. METHODS: Using single-cell RNA sequencing data of isolated 1632 T cells from tumor tissue and 1252 T cells from the peripheral blood of CRC patients, unsupervised clustering analysis was performed to identify functionally distinct T cell populations, followed by correlations and ligand-receptor interactions across cell types. Finally, differential analysis of the tumor-infiltrating T cells between colon cancer and rectal cancer were carried out. RESULTS: A total of eight distinct T cell populations were identified from tumor tissue. Tumor-Treg showed a strong correlation with Th17 cells. CD8(+)T(RM) was positively correlated with CD8(+)IEL. Seven distinct T cell populations were identified from peripheral blood. There was a strong correlation between CD4+T(N) and CD4+blood-T(CM). Colon cancer and rectal cancer showed differences in the composition of tumor-infiltrating T cell populations. Tumor-infiltrating CD8(+)IEL cells were found in rectal cancer but not in colon cancer, while CD8(+) T(N) cells were found in the peripheral blood of colon cancer but not in that of rectal cancer. A larger number of tumor-infiltrating CD8(+) Tex (88.94%) cells were found in the colon cancer than in the rectal cancer (11.06%). The T cells of the colon and rectal cancers showed changes in gene expression pattern. CONCLUSIONS: We characterized the T cell populations in the CRC tumor tissue and peripheral blood. Frontiers Media S.A. 2021-01-22 /pmc/articles/PMC7873865/ /pubmed/33584715 http://dx.doi.org/10.3389/fimmu.2020.620196 Text en Copyright © 2021 Yang, Qi, Pan, Zhou, Wu, Zhuang, Xu, Pan and Han http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Yang, Xi Qi, Quan Pan, Yuefen Zhou, Qing Wu, Yinhang Zhuang, Jing Xu, Jiamin Pan, Mingyue Han, Shuwen Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title | Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title_full | Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title_fullStr | Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title_full_unstemmed | Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title_short | Single-Cell Analysis Reveals Characterization of Infiltrating T Cells in Moderately Differentiated Colorectal Cancer |
title_sort | single-cell analysis reveals characterization of infiltrating t cells in moderately differentiated colorectal cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7873865/ https://www.ncbi.nlm.nih.gov/pubmed/33584715 http://dx.doi.org/10.3389/fimmu.2020.620196 |
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