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Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping

The Italian grape germplasm is characterized by a high level of richness in terms of varieties number, with nearly 600 wine grape varieties listed in the Italian National Register of Grapevine Varieties and with a plethora of autochthonous grapes. In the present study an extended SNP genotyping has...

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Autores principales: D’Onofrio, Claudio, Tumino, Giorgio, Gardiman, Massimo, Crespan, Manna, Bignami, Cristina, de Palma, Laura, Barbagallo, Maria Gabriella, Muganu, Massimo, Morcia, Caterina, Novello, Vittorino, Schneider, Anna, Terzi, Valeria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7874015/
https://www.ncbi.nlm.nih.gov/pubmed/33584749
http://dx.doi.org/10.3389/fpls.2020.605934
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author D’Onofrio, Claudio
Tumino, Giorgio
Gardiman, Massimo
Crespan, Manna
Bignami, Cristina
de Palma, Laura
Barbagallo, Maria Gabriella
Muganu, Massimo
Morcia, Caterina
Novello, Vittorino
Schneider, Anna
Terzi, Valeria
author_facet D’Onofrio, Claudio
Tumino, Giorgio
Gardiman, Massimo
Crespan, Manna
Bignami, Cristina
de Palma, Laura
Barbagallo, Maria Gabriella
Muganu, Massimo
Morcia, Caterina
Novello, Vittorino
Schneider, Anna
Terzi, Valeria
author_sort D’Onofrio, Claudio
collection PubMed
description The Italian grape germplasm is characterized by a high level of richness in terms of varieties number, with nearly 600 wine grape varieties listed in the Italian National Register of Grapevine Varieties and with a plethora of autochthonous grapes. In the present study an extended SNP genotyping has been carried out on Italian germplasm of cultivated Vitis vinifera subsp. sativa and Vitis hybrids. Several hundred Italian varieties maintained in the repositories of scientific Institutions and about one thousand additional varieties derived from previous studies on European, Southern Italy, Magna Graecia and Georgian germplasm were considered. The large genotyping data obtained were used to check the presence of homonyms and synonyms, determine parental relationships, and identify the main ancestors of traditional Italian cultivars and closely-related accessions. The parentage among a set of 1,232 unique varieties has been assessed. A total of 92 new parent-offspring (PO) pairs and 14 new PO trios were identified. The resulted parentage network suggested that the traditional Italian grapevine germplasm originates largely from a few central varieties geographically distributed into several areas of genetic influence: “Strinto porcino” and its offspring “Sangiovese”, “Mantonico bianco” and “Aglianico” mainly as founder varieties of South-Western Italy (IT-SW); Italian Adriatic Coast (IT-AC); and Central Italy with most varieties being offsprings of “Visparola”, “Garganega” and “Bombino bianco”; “Termarina (Sciaccarello)” “Orsolina” and “Uva Tosca” as the main varieties of North-Western Italy (IT-NW) and Central Italy. The pedigree reconstruction by full-sib and second-degree relationships highlighted the key role of some cultivars, and, in particular, the centrality of “Visparola” in the origin of Italian germplasm appeared clear. An hypothetical migration of this variety within the Italian Peninsula from South to North along the eastern side, as well as of “Sangiovese” from South to Central Italy along the Western side might be supposed. Moreover, it was also highlighted that, among the main founders of muscat varieties, “Moscato bianco” and “Zibibbo (Muscat of Alexandria)” have spread over the whole Italy, with a high contribution by the former to germplasm of the North-Western of the peninsula.
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spelling pubmed-78740152021-02-11 Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping D’Onofrio, Claudio Tumino, Giorgio Gardiman, Massimo Crespan, Manna Bignami, Cristina de Palma, Laura Barbagallo, Maria Gabriella Muganu, Massimo Morcia, Caterina Novello, Vittorino Schneider, Anna Terzi, Valeria Front Plant Sci Plant Science The Italian grape germplasm is characterized by a high level of richness in terms of varieties number, with nearly 600 wine grape varieties listed in the Italian National Register of Grapevine Varieties and with a plethora of autochthonous grapes. In the present study an extended SNP genotyping has been carried out on Italian germplasm of cultivated Vitis vinifera subsp. sativa and Vitis hybrids. Several hundred Italian varieties maintained in the repositories of scientific Institutions and about one thousand additional varieties derived from previous studies on European, Southern Italy, Magna Graecia and Georgian germplasm were considered. The large genotyping data obtained were used to check the presence of homonyms and synonyms, determine parental relationships, and identify the main ancestors of traditional Italian cultivars and closely-related accessions. The parentage among a set of 1,232 unique varieties has been assessed. A total of 92 new parent-offspring (PO) pairs and 14 new PO trios were identified. The resulted parentage network suggested that the traditional Italian grapevine germplasm originates largely from a few central varieties geographically distributed into several areas of genetic influence: “Strinto porcino” and its offspring “Sangiovese”, “Mantonico bianco” and “Aglianico” mainly as founder varieties of South-Western Italy (IT-SW); Italian Adriatic Coast (IT-AC); and Central Italy with most varieties being offsprings of “Visparola”, “Garganega” and “Bombino bianco”; “Termarina (Sciaccarello)” “Orsolina” and “Uva Tosca” as the main varieties of North-Western Italy (IT-NW) and Central Italy. The pedigree reconstruction by full-sib and second-degree relationships highlighted the key role of some cultivars, and, in particular, the centrality of “Visparola” in the origin of Italian germplasm appeared clear. An hypothetical migration of this variety within the Italian Peninsula from South to North along the eastern side, as well as of “Sangiovese” from South to Central Italy along the Western side might be supposed. Moreover, it was also highlighted that, among the main founders of muscat varieties, “Moscato bianco” and “Zibibbo (Muscat of Alexandria)” have spread over the whole Italy, with a high contribution by the former to germplasm of the North-Western of the peninsula. Frontiers Media S.A. 2021-01-15 /pmc/articles/PMC7874015/ /pubmed/33584749 http://dx.doi.org/10.3389/fpls.2020.605934 Text en Copyright © 2021 D’Onofrio, Tumino, Gardiman, Crespan, Bignami, de Palma, Barbagallo, Muganu, Morcia, Novello, Schneider and Terzi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
D’Onofrio, Claudio
Tumino, Giorgio
Gardiman, Massimo
Crespan, Manna
Bignami, Cristina
de Palma, Laura
Barbagallo, Maria Gabriella
Muganu, Massimo
Morcia, Caterina
Novello, Vittorino
Schneider, Anna
Terzi, Valeria
Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title_full Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title_fullStr Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title_full_unstemmed Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title_short Parentage Atlas of Italian Grapevine Varieties as Inferred From SNP Genotyping
title_sort parentage atlas of italian grapevine varieties as inferred from snp genotyping
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7874015/
https://www.ncbi.nlm.nih.gov/pubmed/33584749
http://dx.doi.org/10.3389/fpls.2020.605934
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