Cargando…

RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs

BACKGROUND: Long INterspersed Element-1 (LINE-1) is an autonomous retroelement able to “copy-and-paste” itself into new loci of the host genome through a process called retrotransposition. The LINE-1 bicistronic mRNA codes for two proteins, ORF1p, a nucleic acid chaperone, and ORF2p, a protein with...

Descripción completa

Detalles Bibliográficos
Autores principales:	Briggs, Erica M., McKerrow, Wilson, Mita, Paolo, Boeke, Jef D., Logan, Susan K., Fenyö, David
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7874467/ https://www.ncbi.nlm.nih.gov/pubmed/33563338 http://dx.doi.org/10.1186/s13100-021-00233-3

Ejemplares similares

LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint
por: McKerrow, Wilson, et al.
Publicado: (2022)

LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq
por: McKerrow, Wilson, et al.
Publicado: (2023)

Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells
por: McKerrow, Wilson, et al.
Publicado: (2020)

LINE-1 ORF2p expression is nearly imperceptible in human cancers
por: Ardeljan, Daniel, et al.
Publicado: (2019)

A re-evaluation of LINE-1 ORF2 expression in LNCaP prostate cancer cells
por: Briggs, Erica M., et al.
Publicado: (2019)

Expression and detection of LINE-1 ORF-encoded proteins
por: Dai, Lixin, et al.
Publicado: (2014)

Validated Impacts of N6-Methyladenosine Methylated mRNAs on Apoptosis and Angiogenesis in Myocardial Infarction Based on MeRIP-Seq Analysis
por: Zhang, Yingjie, et al.
Publicado: (2022)

Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9
por: Briggs, Erica M., et al.
Publicado: (2021)

MoAIMS: efficient software for detection of enriched regions of MeRIP-Seq
por: Zhang, Yiqian, et al.
Publicado: (2020)

Genome-wide RIP-Chip analysis of translational repressor-bound mRNAs in the Plasmodium gametocyte
por: Guerreiro, Ana, et al.
Publicado: (2014)

Genome-wide identification of DNA-PKcs-associated RNAs by RIP-Seq
por: Song, Zhiquan, et al.
Publicado: (2019)

Developmental regulation of canonical and small ORF translation from mRNAs
por: Patraquim, Pedro, et al.
Publicado: (2020)

Fluorescence ImmunoPrecipitation (FLIP): a Novel Assay for High-Throughput IP
por: Mita, Paolo, et al.
Publicado: (2016)

DAP5 enables main ORF translation on mRNAs with structured and uORF-containing 5′ leaders
por: Weber, Ramona, et al.
Publicado: (2022)

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
por: Burkhardt, David H, et al.
Publicado: (2017)

Determination of long non-coding RNAs associated with EZH2 in neuroblastoma by RIP-seq, RNA-seq and ChIP-seq
por: Ye, Mujie, et al.
Publicado: (2020)

BRCA1 and S Phase DNA Repair Pathways Restrict LINE-1 Retrotransposition in Human Cells
por: Mita, Paolo, et al.
Publicado: (2020)

Reporter mRNAs cleaved by Rnt1p are exported and degraded in the cytoplasm
por: Meaux, Stacie, et al.
Publicado: (2011)

EZH2 RIP-seq Identifies Tissue-specific Long Non-coding RNAs
por: Wang, Yan, et al.
Publicado: (2018)

Method for the Isolation and Identification of mRNAs, microRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts using RIP-Chip
por: Dahm, Garrett M., et al.
Publicado: (2012)

Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP
por: Sheppard, Carol, et al.
Publicado: (2016)

Transcriptome-wide quantification of double-stranded RNAs in live mouse tissues by dsRIP-Seq
por: Gao, Yimeng, et al.
Publicado: (2021)

Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function
por: Adney, Emily M., et al.
Publicado: (2019)

Context-dependent deposition and regulation of mRNAs in P-bodies
por: Wang, Congwei, et al.
Publicado: (2018)

Genome-wide identification of AGO18b-bound miRNAs and phasiRNAs in maize by cRIP-seq
por: Sun, Wei, et al.
Publicado: (2019)

Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression
por: Sun, Xiaoji, et al.
Publicado: (2018)

R.I.P. Computer Animal Shelter
Publicado: (2012)

R.I.P: The case sheet in periodontology
por: Grover, Harpreet Singh
Publicado: (2023)

Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis
por: Bersani, Cinzia, et al.
Publicado: (2015)

Identification and comparison of m6A modifications in glioblastoma non-coding RNAs with MeRIP-seq and Nanopore dRNA-seq
por: Krusnauskas, Raulas, et al.
Publicado: (2023)

MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data
por: Li, Yuli, et al.
Publicado: (2013)

LINE-1 protein localization and functional dynamics during the cell cycle
por: Mita, Paolo, et al.
Publicado: (2018)

Gibson Deletion: a novel application of isothermal in vitro recombination
por: Kalva, Swara, et al.
Publicado: (2018)

The importance of L1 ORF2p cryptic sequence to ORF2p fragment-mediated cytotoxicity
por: Christian, Claiborne M., et al.
Publicado: (2016)

Correction: Context-dependent deposition and regulation of mRNAs in P-bodies
por: Wang, Congwei, et al.
Publicado: (2018)

Recruitment of mRNAs to P granules by condensation with intrinsically-disordered proteins
por: Lee, Chih-Yung S, et al.
Publicado: (2020)

Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
por: Wu, Dong-Mei, et al.
Publicado: (2019)

miR-1289 and “Zipcode”-like Sequence Enrich mRNAs in Microvesicles
por: Bolukbasi, Mehmet Fatih, et al.
Publicado: (2012)

Lis1 puts mRNAs in their place
por: Short, Ben
Publicado: (2013)

Translation reinitiation after uORFs does not fully protect mRNAs from nonsense-mediated decay
por: Russell, Paul J., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_0n5hbgf1i3cupn26nqbstprq6l