Cargando…

Efficient neural spike sorting using data subdivision and unification

Neural spike sorting is prerequisite to deciphering useful information from electrophysiological data recorded from the brain, in vitro and/or in vivo. Significant advancements in nanotechnology and nanofabrication has enabled neuroscientists and engineers to capture the electrophysiological activit...

Descripción completa

Detalles Bibliográficos
Autores principales: Ul Hassan, Masood, Veerabhadrappa, Rakesh, Bhatti, Asim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7875432/
https://www.ncbi.nlm.nih.gov/pubmed/33566859
http://dx.doi.org/10.1371/journal.pone.0245589
_version_ 1783649773204537344
author Ul Hassan, Masood
Veerabhadrappa, Rakesh
Bhatti, Asim
author_facet Ul Hassan, Masood
Veerabhadrappa, Rakesh
Bhatti, Asim
author_sort Ul Hassan, Masood
collection PubMed
description Neural spike sorting is prerequisite to deciphering useful information from electrophysiological data recorded from the brain, in vitro and/or in vivo. Significant advancements in nanotechnology and nanofabrication has enabled neuroscientists and engineers to capture the electrophysiological activities of the brain at very high resolution, data rate and fidelity. However, the evolution in spike sorting algorithms to deal with the aforementioned technological advancement and capability to quantify higher density data sets is somewhat limited. Both supervised and unsupervised clustering algorithms do perform well when the data to quantify is small, however, their efficiency degrades with the increase in the data size in terms of processing time and quality of spike clusters being formed. This makes neural spike sorting an inefficient process to deal with large and dense electrophysiological data recorded from brain. The presented work aims to address this challenge by providing a novel data pre-processing framework, which can enhance the efficiency of the conventional spike sorting algorithms significantly. The proposed framework is validated by applying on ten widely used algorithms and six large feature sets. Feature sets are calculated by employing PCA and Haar wavelet features on three widely adopted large electrophysiological datasets for consistency during the clustering process. A MATLAB software of the proposed mechanism is also developed and provided to assist the researchers, active in this domain.
format Online
Article
Text
id pubmed-7875432
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-78754322021-02-19 Efficient neural spike sorting using data subdivision and unification Ul Hassan, Masood Veerabhadrappa, Rakesh Bhatti, Asim PLoS One Research Article Neural spike sorting is prerequisite to deciphering useful information from electrophysiological data recorded from the brain, in vitro and/or in vivo. Significant advancements in nanotechnology and nanofabrication has enabled neuroscientists and engineers to capture the electrophysiological activities of the brain at very high resolution, data rate and fidelity. However, the evolution in spike sorting algorithms to deal with the aforementioned technological advancement and capability to quantify higher density data sets is somewhat limited. Both supervised and unsupervised clustering algorithms do perform well when the data to quantify is small, however, their efficiency degrades with the increase in the data size in terms of processing time and quality of spike clusters being formed. This makes neural spike sorting an inefficient process to deal with large and dense electrophysiological data recorded from brain. The presented work aims to address this challenge by providing a novel data pre-processing framework, which can enhance the efficiency of the conventional spike sorting algorithms significantly. The proposed framework is validated by applying on ten widely used algorithms and six large feature sets. Feature sets are calculated by employing PCA and Haar wavelet features on three widely adopted large electrophysiological datasets for consistency during the clustering process. A MATLAB software of the proposed mechanism is also developed and provided to assist the researchers, active in this domain. Public Library of Science 2021-02-10 /pmc/articles/PMC7875432/ /pubmed/33566859 http://dx.doi.org/10.1371/journal.pone.0245589 Text en © 2021 Ul Hassan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ul Hassan, Masood
Veerabhadrappa, Rakesh
Bhatti, Asim
Efficient neural spike sorting using data subdivision and unification
title Efficient neural spike sorting using data subdivision and unification
title_full Efficient neural spike sorting using data subdivision and unification
title_fullStr Efficient neural spike sorting using data subdivision and unification
title_full_unstemmed Efficient neural spike sorting using data subdivision and unification
title_short Efficient neural spike sorting using data subdivision and unification
title_sort efficient neural spike sorting using data subdivision and unification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7875432/
https://www.ncbi.nlm.nih.gov/pubmed/33566859
http://dx.doi.org/10.1371/journal.pone.0245589
work_keys_str_mv AT ulhassanmasood efficientneuralspikesortingusingdatasubdivisionandunification
AT veerabhadrapparakesh efficientneuralspikesortingusingdatasubdivisionandunification
AT bhattiasim efficientneuralspikesortingusingdatasubdivisionandunification